1 files changed, 0 insertions, 28 deletions
diff --git a/scripts/efsa2csv.rb b/scripts/efsa2csv.rb
deleted file mode 100755
index 48d4fb8..0000000
--- a/scripts/efsa2csv.rb
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/usr/bin/env ruby
-require 'csv'
-require_relative '../../lazar/lib/lazar.rb'
-
-i = 0
-db = {}
-CSV.foreach(ARGV[0], :encoding => "UTF-8", :col_sep => "\t", :liberal_parsing => true) do |row|
-  #STDERR.puts i if i%100 == 0
-  if i > 0 and row[11] and !row[11].empty? and row[24].match(/Salmonella/i) and ( row[25].match("TA 98") or row[25].match("TA 100") ) and row[33]
-    begin
-      c = OpenTox::Compound.from_smiles(row[11].gsub('"','')).smiles
-    rescue
-      c = OpenTox::Compound.from_inchi(row[12]).smiles # some smiles (row[11]) contain non-parseable characters
-    end
-    db[c] ||= {}
-    db[c][:id] ||= "efsa_#{row[2]}"
-    if row[33].match(/Positiv/i)
-      db[c][:value] = 1 # at least one positive result in TA 98 or TA 100
-    elsif row[33].match(/Negativ/i)
-      db[c][:value] ||= 0
-    end
-  end
-  i += 1
-end
-
-db.each do |s,v|
-  puts [v[:id],s,v[:value]].join ","
-end