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#!/usr/bin/env ruby
require 'csv'
require_relative '../../lazar/lib/lazar.rb'
i = 0
db = {}
CSV.foreach(ARGV[0], :encoding => 'ISO-8859-1', :col_sep => "\t") do |row|
begin
if i > 0 and row[11]
c = OpenTox::Compound.from_smiles(row[11]).smiles
#c = row[11]
if row[24].match(/Salmonella/i)
if row[25].match("TA 98") or row[25].match("TA 100")
if row[33].match(/Positiv/i)
db[c] = 1 # at least one positive result in TA 98 or TA 100
elsif row[33].match(/Negativ/i)
db[c] ||= 0
end
end
end
end
rescue
end
i += 1
end
db.each do |s,v|
puts [s,v].join ","
end
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