1 files changed, 152 insertions, 0 deletions
diff --git a/views/prediction.haml b/views/prediction.haml
new file mode 100644
index 0000000..e05285a
--- /dev/null
+++ b/views/prediction.haml
@@ -0,0 +1,152 @@
+%div
+  %a.btn.btn-xs.btn-default{:href => to('/predict'), :style=>"margin-bottom:1em;"}
+    %span.glyphicon.glyphicon-chevron-left
+    New Prediction
+
+  %h3.help-block
+    Similar particles
+  
+  %hr  
+  :javascript 
+    $(document).ready(function(){
+      $(".tablesorter").tablesorter({
+        debug: false,
+        theme: "bootstrap",
+        //headerTemplate: '{content} {icon}',
+        widgets: ['uitheme', 'staticRow', 'stickyHeaders'],
+        widgetOptions: {
+          stickyHeaders_attachTo: 'neighbors',
+          stickyHeaders_offset: 0,
+          stickyHeaders_xScroll : null
+        },
+        sortList: [[1,1]],
+        widthFixed: false,
+      });
+      $('#neighbors').doubleScroll();
+    });
+
+
+  #neighbors.table-responsive
+    /%table.tablesorter{:style => "max-width:100%;white-space:nowrap;"}
+    %table.tablesorter
+      %thead
+        %tr
+          %th
+            ID  
+          %th
+            Similarity
+          %th
+            Composition  
+          %th.tox{:style => "max-width:100%;white-space:nowrap;"}
+            Toxicity 
+            %br 
+            Net cell association
+            %br
+            [mL/ug(Mg)]
+          - if @type =~ /physchem|proteomics/
+            - @input.each{|d| Feature.find(d[0]).category}.each do |key|
+              - feature = Feature.find_by(:id=>key[0])
+              - name = feature.name
+              - if (feature[:conditions] && !feature[:conditions]["MEDIUM"].blank?)
+                - name = feature.name + " / " + feature[:conditions]["MEDIUM"]
+              - else
+                - name = feature.name
+              %th.physchem.sorter-false
+                %a.descriptor{:href=>$npo[feature.name], :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
+      %tbody
+        / query and match combined
+        %tr.static
+          / id
+          %td
+            - if @match
+              %a{:href=> $ambit_search+@name, :rel=>"external"}
+                %h5.th5= @name
+            - else
+              %h5.th5 Query
+          / similarity
+          %td
+            %h5.th5 1.0
+          / composition
+          %td
+            - core = Substance.find @nanoparticle[:core_id]
+            %h5.th5 Core:
+            %a{:href=>core.source, :rel=>"external"}= "["+core.name+"]"
+            %br
+            - if @type == "fingerprint"
+              - coating = []
+              - @nanoparticle[:coating_ids].each{|id| coating << Substance.find(id) }
+              %h5.th5 Coating:
+              - coating.each do |co|
+                %a{:href=>co.source, :rel=>"external"}= co.name
+                %br
+          / tox
+          %td.tox
+            - if @prediction[:value]
+              %h5.th5 Prediction:
+              = @prediction[:value].round(3)
+              %br
+            - if @prediction[:value].blank?
+              %h5.th5 Prediction:
+              = "not available"
+              %br
+            - if @prediction[:prediction_interval]
+              %h5
+                %a{:href=>"https://en.wikipedia.org/wiki/Prediction_interval", :rel=>"external"} 95% Prediction interval:
+                - interval = @prediction[:prediction_interval].nil? ? " - - " : @prediction[:prediction_interval].collect{|i| i.round(2)}
+              = "#{interval[0]} - #{interval[1]}"
+            - if @prediction[:measurements]
+              %br
+              %h5.th5 Measurement:
+              - @prediction[:measurements].each do |m|
+                = m
+            - if !@prediction[:value] && !@prediction[:measurements]
+              %h5.th5 not available
+          / physchem
+          - if @type =~ /physchem|proteomics/
+            - @input.each do |v|
+              %td.physchem
+                %div{:style=>"display:inline-block;padding-right:20px;"}
+                  - if v[1].nil?
+                    %p x
+                  - else
+                    %p= v[1][0].round(3)
+
+        / neighbors
+        - if @prediction[:neighbors]
+          - @prediction[:neighbors].each_with_index do |neighbor,idx|
+            - nano = Nanoparticle.find(neighbor[:id])
+            - core = Substance.find nano.core_id
+            - coating = []
+            - nano.coating_ids.each{|id| coating << Substance.find(id)}
+            %tr
+              / ID
+              %td
+                %a{:href=> $ambit_search+nano.name, :rel=>"external"}
+                  %h5.th5= nano.name
+              / Similarity
+              %td
+                %h5.th5= neighbor[:similarity].round(3)
+              / Composition
+              %td
+                %h5.th5 Core:
+                %a{:href=>core.source, :rel=> "external"}= "["+core.name+"]"
+                %br
+                %h5.th5 Coating:
+                - coating.each do |co| 
+                  %a{:href=>co.source, :rel=>"external"}= co.name
+                  %br
+              / Tox
+              %td.tox
+                %h5.th5 Measurement:
+                = neighbor[:measurement]
+              / Physchem
+              - case @type
+              - when "physchem"
+                - nano.properties.delete_if{|id,v| !@physchem_relevant_features.include?(Feature.find(id))}.sort_by{|id,v| @physchem_relevant_features.index Feature.find(id)}.each do |k,v|
+                  %td.physchem
+                    = v[0].round(3) unless v.nil?
+              - when "proteomics"
+                - nano.properties.delete_if{|id,v| !@proteomics_relevant_features.include?(Feature.find(id))}.sort_by{|id,v| @proteomics_relevant_features.index Feature.find(id)}.each do |k,v|
+                  %td.physchem
+                    = v[0].round(3) unless v.nil?
+