From e11e5c3a521561cc42b80c667c12e71438ea12e1 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Fri, 9 Mar 2012 22:04:06 +0000 Subject: gemspec updated --- README.markdown | 32 +++----------------------------- 1 file changed, 3 insertions(+), 29 deletions(-) (limited to 'README.markdown') diff --git a/README.markdown b/README.markdown index 5f12ad9..f4e20f4 100644 --- a/README.markdown +++ b/README.markdown @@ -6,38 +6,12 @@ Thin Ruby wrapper for the [OpenTox](http://www.opentox.org) REST API Installation ------------ - sudo gem install opentox-ruby-minimal + gem install opentox-client -opentox-ruby depends on [rapper](http://librdf.org/raptor/rapper.html) for parsing OWL-DL in RDFXML format. - -Quickstart ----------- - -This example shows how to create a lazar model and predict a compound, it assumes that you have access to a working installation of OpenTox services with corresponding settings in $HOME/.opentox/config. Run the following code in irb or from a ruby script: - - require 'rubygems' - require 'opentox-ruby' - - # Authenticate - subjectid = OpenTox::Authorization.authenticate(USER,PASSWORD) - - # Upload a dataset - training_dataset = OpenTox::Dataset.create_from_csv_file(TRAINING_DATASET, subjectid) - - # Create a prediction model - model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => training_dataset.uri, :subjectid => subjectid}).to_s - lazar = OpenTox::Model::Lazar.find model_uri, subjectid - - # Predict a compound - compound = OpenTox::Compound.from_smiles("c1ccccc1NN") - prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => subjectid) - prediction = OpenTox::LazarPrediction.find(prediction_uri, subjectid) - puts prediction.to_yaml - -[API documentation](http://rdoc.info/gems/opentox-ruby-minimal) +[API documentation](http://rdoc.info/gems/opentox-client) ------------------------------------------------------------------- Copyright --------- -Copyright (c) 2009-2011 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details. +Copyright (c) 2009-2012 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details. -- cgit v1.2.3