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| author | Andreas Maunz <andreas@maunz.de> | 2012-02-24 11:04:52 +0100 |
|---|---|---|
| committer | Andreas Maunz <andreas@maunz.de> | 2012-02-24 11:04:52 +0100 |
| commit | d7c0289a438f26c4fadd4468623f3152119e7f5a (patch) | |
| tree | a6c1248b8cac663c45613e8a413fc0548e90a7e1 | |
| parent | 44780f8305e3a4fbaa0c06ce73af50e95105a813 (diff) | |
Increase bootstrap samples to 150 in RFE
| -rw-r--r-- | lib/algorithm.rb | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/lib/algorithm.rb b/lib/algorithm.rb index db21c46..bf058fd 100644 --- a/lib/algorithm.rb +++ b/lib/algorithm.rb @@ -497,7 +497,7 @@ module OpenTox subsets = subsets[subsets>1] # Recursive feature elimination - rfProfile = rfe( x=features, y=y, rfeControl=rfeControl(functions=rfFuncs, number=50), sizes=subsets) + rfProfile = rfe( x=features, y=y, rfeControl=rfeControl(functions=rfFuncs, number=150), sizes=subsets) # read existing dataset and select most useful features csv=feats[,c("SMILES", rfProfile$optVariables)] |