diff options
| -rw-r--r-- | lib/serializer.rb | 44 |
1 files changed, 22 insertions, 22 deletions
diff --git a/lib/serializer.rb b/lib/serializer.rb index 675c619..30cb2ba 100644 --- a/lib/serializer.rb +++ b/lib/serializer.rb @@ -55,7 +55,7 @@ module OpenTox OT.predictedVariables => { RDF["type"] => [{ "type" => "uri", "value" => OWL.ObjectProperty }] } , OT.paramValue => { RDF["type"] => [{ "type" => "uri", "value" => OWL.ObjectProperty }] } , - #object props for validation# + #object props for validation# OT.model => { RDF["type"] => [{ "type" => "uri", "value" => OWL.ObjectProperty }] } , OT.trainingDataset => { RDF["type"] => [{ "type" => "uri", "value" => OWL.ObjectProperty }] } , OT.predictionFeature => { RDF["type"] => [{ "type" => "uri", "value" => OWL.ObjectProperty }] } , @@ -87,7 +87,7 @@ module OpenTox OT.percentageCompleted => { RDF["type"] => [{ "type" => "uri", "value" => OWL.AnnotationProperty }] } , OT.acceptValue => { RDF["type"] => [{ "type" => "uri", "value" => OWL.AnnotationProperty }] } , - # annotation props for validation + # annotation props for validation OT.numUnpredicted => { RDF["type"] => [{ "type" => "uri", "value" => OWL.AnnotationProperty }] } , OT.crossvalidationFold => { RDF["type"] => [{ "type" => "uri", "value" => OWL.AnnotationProperty }] } , OT.numInstances => { RDF["type"] => [{ "type" => "uri", "value" => OWL.AnnotationProperty }] } , @@ -143,8 +143,8 @@ module OpenTox @data_entries = {} @values_id = 0 @parameter_id = 0 - - @classes = Set.new + + @classes = Set.new @object_properties = Set.new @annotation_properties = Set.new @datatype_properties = Set.new @@ -208,7 +208,7 @@ module OpenTox @object[uri] = { RDF["type"] => [{ "type" => "uri", "value" => OT.Task }] } add_metadata uri, metadata end - + # Add a resource defined by resource_class and content # (see documentation of add_content for example) # @param [String] uri of resource @@ -223,10 +223,10 @@ module OpenTox def add_uri(uri,type) @object[uri] = { RDF["type"] => [{ "type" => "uri", "value" => type }] } end - + private @@content_id = 1 - + #Recursiv function to add content #@example # { DC.description => "bla", @@ -244,7 +244,7 @@ module OpenTox hash.each do |u,v| if v.is_a? Hash # value is again a hash, i.e. a new owl class is added - # first make sure type (==class) is set + # first make sure type (==class) is set type = v[RDF.type] raise "type missing for "+u.to_s+" content:\n"+v.inspect unless type raise "class unknown "+type.to_s+" (for "+u.to_s+")" unless @object.has_key?(type) @@ -256,7 +256,7 @@ module OpenTox # add content to new class add_content(genid,v) elsif v.is_a? Array - # value is an array, i.e. a list of values with property is added + # value is an array, i.e. a list of values with property is added v.each{ |vv| add_content( uri, { u => vv } ) } else # v.is_a? String # simple string value @@ -268,7 +268,7 @@ module OpenTox end end end - + public # Add metadata @@ -329,7 +329,7 @@ module OpenTox v = [{ "type" => "uri", "value" => value}] when "literal" v = [{ "type" => "literal", "value" => value, "datatype" => datatype(value) }] - else + else raise "Illegal type #{type(value)} for #{value}." end @object[values] = { @@ -342,7 +342,7 @@ module OpenTox end # Serializers - + # Convert to N-Triples # @return [text/plain] Object OWL-DL in N-Triples format def to_ntriples @@ -353,7 +353,7 @@ module OpenTox entry.each do |p,objects| p = url(p) objects.each do |o| - case o["type"] + case o["type"] when "uri" o = url(o["value"]) when "literal" @@ -433,20 +433,20 @@ module OpenTox end def literal(value,type) - # concat and << are faster string concatination operators than + + # concat and << are faster string concatination operators than + '"'.concat(value.to_s).concat('"^^<').concat(type).concat('>') end def url(uri) - # concat and << are faster string concatination operators than + + # concat and << are faster string concatination operators than + '<'.concat(uri).concat('>') end def rdf_types - @classes.each { |c| @object[c] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['Class'] }] } } - @object_properties.each { |p| @object[p] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['ObjectProperty'] }] } } - @annotation_properties.each { |a| @object[a] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['AnnotationProperty'] }] } } - @datatype_properties.each { |d| @object[d] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['DatatypeProperty'] }] } } + @classes.each { |c| @object[c] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['Class'] }] } } + @object_properties.each { |p| @object[p] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['ObjectProperty'] }] } } + @annotation_properties.each { |a| @object[a] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['AnnotationProperty'] }] } } + @datatype_properties.each { |d| @object[d] = { RDF["type"] => [{ "type" => "uri", "value" => OWL['DatatypeProperty'] }] } } end end @@ -474,11 +474,11 @@ module OpenTox entries.each do |feature, values| i = features.index(feature)+1 values.each do |value| - if row_container[0][i] - LOGGER.debug "Feature '#{feature}' (nr '#{i}'): '#{value}'" + if row_container[0][i] + #LOGGER.debug "Feature '#{feature}' (nr '#{i}'): '#{value}'" row_container << row_container.last.collect row_container.last[i] = value - LOGGER.debug "RC: #{row_container.to_yaml}" + #LOGGER.debug "RC: #{row_container.to_yaml}" else row_container.each { |r| r[i] = value } end |