add tests for investigation data sparql templates

1 files changed, 70 insertions, 5 deletions

diff --git a/test/toxbank-investigation-sparql.rb b/test/toxbank-investigation-sparql.rb
index 0adc2e6..bf181a0 100644
--- a/test/toxbank-investigation-sparql.rb
+++ b/test/toxbank-investigation-sparql.rb
@@ -1,7 +1,7 @@
 require_relative "toxbank-setup.rb"
 
 # Test API extension SPARQL templates 
-class TBSPARQLTest < MiniTest::Test
+class TBSPARQLTest < Minitest::Unit::TestCase
 
   # login as pi and create a test investigation
   def setup
@@ -18,17 +18,82 @@ class TBSPARQLTest < MiniTest::Test
   end  
 
   # initial tests to be changed
-  def test_01_initial_nonexisting_template
+  def test_nonexisting_template
     assert_raises OpenTox::ResourceNotFoundError do
-      response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/not_existing_template", {}, {:accept => "application/rdf+xml", :subjectid => $pi[:subjectid]}
+      response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/not_existing_template", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
     end
   end
 
-  def test_02_initial_existing_template
-    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/investigation_details", {}, {:accept => "application/rdf+xml", :subjectid => $pi[:subjectid]}
+  def test_existing_template
+    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/investigation_details", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
     assert_equal 200, response.code
   end
 
+  def test_camelcase_template
+    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/InvestigationDetails", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
+    assert_equal 200, response.code
+  end
+
+  def test_factors_by_investigation
+    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/factors_by_investigation", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
+    result = JSON.parse(response)
+    factorvalues = result["results"]["bindings"].map {|n|  "#{n["factorname"]["value"]}:::#{n["value"]["value"]}"}
+    assert factorvalues.include?("limiting nutrient:::phosphorus")
+    assert factorvalues.include?("limiting nutrient:::glucose")
+    assert factorvalues.include?("limiting nutrient:::carbon")
+    assert factorvalues.include?("limiting nutrient:::sulfur")
+    assert factorvalues.include?("limiting nutrient:::nitrogen")
+    assert factorvalues.include?("limiting nutrient:::ethanol")
+    assert factorvalues.include?("rate:::0.1")
+    assert factorvalues.include?("rate:::0.2")
+    assert factorvalues.include?("rate:::0.07")
+  end
+
+  def test_characteristics_by_investigation
+    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/characteristics_by_investigation", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
+    result = JSON.parse(response)
+    propnamevalues = result["results"]["bindings"].map {|n|  "#{n["propname"]["value"]}:::#{n["value"]["value"]}:::#{n["ontouri"]["value"]}"}
+    assert propnamevalues.include?("organism:::Saccharomyces cerevisiae (Baker's yeast):::http://purl.obolibrary.org/obo/NEWT_4932")
+    assert propnamevalues.include?("Label:::biotin:::http://purl.obolibrary.org/chebi/15956")
+    assert propnamevalues.include?("organism:::Saccharomyces cerevisiae (Baker's yeast):::http://purl.obolibrary.org/obo/NEWT_4932")
+  end
+
+
+  def test_investigation_endpoint_technology
+    response = OpenTox::RestClientWrapper.get "#{@@uri}/sparql/investigation_endpoint_technology", {}, {:accept => "application/json", :subjectid => $pi[:subjectid]}
+    result = JSON.parse(response)
+    endpointtechnologies = result["results"]["bindings"].map {|n|  "#{n["endpoint"]["value"]}:::#{n["technology"]["value"]}"}
+    assert_equal endpointtechnologies.size, 4
+  end
+
+  def test_investigation_and_characteristics
+  end
+
+  def test_investigations_and_protocols
+  end
+
+  def test_investigations_and_factors
+  end
+
+  def test_protocols_by_factors
+  end
+
+  def test_invetsigation_by_factors
+  end
+
+  def test_investigation_by_factorend
+  end
+
+  def test_investigation_by_characteristic_valueend
+  end
+
+  def test_investigation_by_characteristic_name
+  end
+
+  def test_investigation_by_characteristic
+  end
+
+
   # delete investigation/{id}
   # @note expect code 200
   def teardown