test E_MTAB

1 files changed, 35 insertions, 4 deletions

diff --git a/test/rdf_check.rb b/test/rdf_check.rb
index 58eecf1..82e1554 100644
--- a/test/rdf_check.rb
+++ b/test/rdf_check.rb
@@ -16,6 +16,9 @@ class UploadTest < Test::Unit::TestCase
     #test_id_query_sparqle
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
     assert_match /[title, Manchester, givenname, Castrillo]/, response
+    #test_resource_ISA
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/ISA_3981`.chomp
+    assert_match /[givenname, Castrillo, family\_name, Juan]/, response
     #test_metadata_query_sparqle
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/metadata`.chomp
     assert_match /[I2225, BII\-I\-1, S2223, S2224, Growth, Background]/, response
@@ -24,16 +27,44 @@ class UploadTest < Test::Unit::TestCase
     assert_match /[BII\-I\-1, title, Growth, abstract, Background]/, response
     #test_resource_Study
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/S2223`.chomp
-    assert_match /[hasProtocol, P\_2202, description, Comprehensive, title, rapamycin, Rapamycin, Affymetrix]/, response
+    assert_match /[hasAssay, A1269, hasProtocol, P\_2202, description, Comprehensive, title, rapamycin, Rapamycin, Affymetrix]/, response
     #test_resource_Assay
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/A1269`.chomp
+    #TODO fix Assay content
     assert_match /Assay/, response
     #test_resource_Protocol
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/P_2202`.chomp
     assert_match /[mRNA, extraction]/, response
+  end  
+  def test_02_query_sparqle_rdf_E_MTAB
+    id = OpenTox::Authorization.authenticate($aa[:user],$aa[:password])
+    #test_all
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/`.chomp
+    assert_match /[https\:\/\/toxbanktest2, https\:\/\/toxbank\-dev]/, response
+    #test_id_query_sparqle
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    #TODO fix givenname
+    assert_match /[title, EMBL\-EBI, hasStudy, S2008, hasMember, ISA_60553]/, response
     #test_resource_ISA
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/ISA_3981`.chomp
-    assert_match /[givenname, Castrillo, family\_name, Juan]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/ISA_60553`.chomp
+    assert_match /[givenname, Ruth, family\_name, Akhtar]/, response
+    #test_metadata_query_sparqle
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/metadata`.chomp
+    assert_match /[I2]/, response
+    #test_resource_Investigation
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/I2`.chomp
+    #TODO assert_match /[title, abstract]/, response
+    assert_match /[S2008]/, response
+    #test_resource_Study
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/S2008`.chomp
+    assert_match /[TG\-GATEs]/, response
+    assert_match /[hasAssay, A1838, hasProtocol, P_2010]/, response
+    #test_resource_Assay
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/A1838`.chomp
+    #TODO fix Assay content
+    assert_match /Assay/, response
+    #test_resource_Protocol
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/P_2010`.chomp
+    assert_match /[label, P\-MTAB\-23090]/, response
   end  
-
 end