tests rdf content with TB specific fields

1 files changed, 28 insertions, 51 deletions

diff --git a/test/rdf_check.rb b/test/rdf_check.rb
index 82e1554..587e342 100644
--- a/test/rdf_check.rb
+++ b/test/rdf_check.rb
@@ -8,63 +8,40 @@ class UploadTest < Test::Unit::TestCase
   def teardown
   end
  
-  def test_01_query_sparqle_rdf_BII_I_1
+  def test_01_check_rdf_with_ToxBank_specific_fields_on_BII_I_1
     id = OpenTox::Authorization.authenticate($aa[:user],$aa[:password])
-    #test_all
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/`.chomp
-    assert_match /[https\:\/\/toxbanktest2, https\:\/\/toxbank\-dev]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
+    assert_match /[Investigation Identifier, BII\-I\-1]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
+    assert_match /[Investigation Title, Growth control of the eukaryote cell\: a systems biology study in yeast]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
+    assert_match /[Investigation Description, Background Cell growth underlies many key cellular and developmental processes]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
+    assert_match /[Owning Organisation URI, TBO\:G176]/, response
     #test_id_query_sparqle
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
-    assert_match /[title, Manchester, givenname, Castrillo]/, response
+    assert_match /[Consortium URI, TBC:G2]/, response
     #test_resource_ISA
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/ISA_3981`.chomp
-    assert_match /[givenname, Castrillo, family\_name, Juan]/, response
-    #test_metadata_query_sparqle
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/metadata`.chomp
-    assert_match /[I2225, BII\-I\-1, S2223, S2224, Growth, Background]/, response
-    #test_resource_Investigation
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/I2225`.chomp
-    assert_match /[BII\-I\-1, title, Growth, abstract, Background]/, response
-    #test_resource_Study
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/S2223`.chomp
-    assert_match /[hasAssay, A1269, hasProtocol, P\_2202, description, Comprehensive, title, rapamycin, Rapamycin, Affymetrix]/, response
-    #test_resource_Assay
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/A1269`.chomp
-    #TODO fix Assay content
-    assert_match /Assay/, response
-    #test_resource_Protocol
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0/P_2202`.chomp
-    assert_match /[mRNA, extraction]/, response
-  end  
-  def test_02_query_sparqle_rdf_E_MTAB
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/0`.chomp
+    assert_match /[Investigation keywords, TBK\:Blotting, Southwestern;TBK\:Molecular Imaging;DOID\:primary carcinoma of the liver cells]/, response
+  end
+  
+  def test_02_check_rdf_with_ToxBank_specific_fields_on_E_MTAB
     id = OpenTox::Authorization.authenticate($aa[:user],$aa[:password])
-    #test_all
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/`.chomp
-    assert_match /[https\:\/\/toxbanktest2, https\:\/\/toxbank\-dev]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    assert_match /[Investigation Identifier, E\-MTAB\-798]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    assert_match /[Investigation Title, Open TG\-GATEs \(in vitro, human\)]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    assert_match /[Investigation Description, The Toxicogenomics Project was a 5\-year collaborative project]/, response
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    assert_match /[Owning Organisation URI, TBO\:G176]/, response
     #test_id_query_sparqle
     response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
-    #TODO fix givenname
-    assert_match /[title, EMBL\-EBI, hasStudy, S2008, hasMember, ISA_60553]/, response
+    assert_match /[Consortium URI, TBC:G2]/, response
     #test_resource_ISA
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/ISA_60553`.chomp
-    assert_match /[givenname, Ruth, family\_name, Akhtar]/, response
-    #test_metadata_query_sparqle
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/metadata`.chomp
-    assert_match /[I2]/, response
-    #test_resource_Investigation
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/I2`.chomp
-    #TODO assert_match /[title, abstract]/, response
-    assert_match /[S2008]/, response
-    #test_resource_Study
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/S2008`.chomp
-    assert_match /[TG\-GATEs]/, response
-    assert_match /[hasAssay, A1838, hasProtocol, P_2010]/, response
-    #test_resource_Assay
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/A1838`.chomp
-    #TODO fix Assay content
-    assert_match /Assay/, response
-    #test_resource_Protocol
-    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2/P_2010`.chomp
-    assert_match /[label, P\-MTAB\-23090]/, response
-  end  
+    response = `curl -i -k -H subjectid:#{id} -H accept:application/rdf+xml https://toxbank-dev.in-silico.ch/2`.chomp
+    assert_match /[Investigation keywords, TBK\:Fluxomics]/, response
+  end
+  
 end