diff options
Diffstat (limited to 'test/fminer-long.rb')
| -rw-r--r-- | test/fminer-long.rb | 13 |
1 files changed, 6 insertions, 7 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb index 187b344..a5027d6 100644 --- a/test/fminer-long.rb +++ b/test/fminer-long.rb @@ -7,14 +7,14 @@ class FminerTest < MiniTest::Test dataset = OpenTox::Dataset.new #multi_cell_call.csv dataset.upload File.join(DATA_DIR,"multi_cell_call.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) dataset.delete feature_dataset.delete end def test_fminer_isscan dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) assert_equal feature_dataset.compounds.size, dataset.compounds.size p feature_dataset dataset.delete @@ -23,12 +23,11 @@ class FminerTest < MiniTest::Test def test_fminer_kazius dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 50) - #feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 200) - #feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) + # TODO reactivate default settings + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) assert_equal feature_dataset.compounds.size, dataset.compounds.size - p feature_dataset.compounds.size - p feature_dataset.features.size + feature_dataset = Dataset.find feature_dataset.id + assert feature_dataset.data_entries.size, dataset.compounds.size dataset.delete feature_dataset.delete end |