diff options
Diffstat (limited to 'test/fminer-long.rb')
| -rw-r--r-- | test/fminer-long.rb | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb index e396145..187b344 100644 --- a/test/fminer-long.rb +++ b/test/fminer-long.rb @@ -4,7 +4,7 @@ class FminerTest < MiniTest::Test def test_fminer_multicell # TODO aborts, probably fminer - dataset = OpenTox::MeasuredDataset.new + dataset = OpenTox::Dataset.new #multi_cell_call.csv dataset.upload File.join(DATA_DIR,"multi_cell_call.csv") feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) @@ -13,8 +13,7 @@ class FminerTest < MiniTest::Test end def test_fminer_isscan - dataset = OpenTox::MeasuredDataset.new - dataset.upload File.join(DATA_DIR,"ISSCAN-multi.csv") + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) assert_equal feature_dataset.compounds.size, dataset.compounds.size p feature_dataset @@ -23,8 +22,9 @@ class FminerTest < MiniTest::Test end def test_fminer_kazius - dataset = OpenTox::MeasuredDataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 200) + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") + feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 50) + #feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 200) #feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15) assert_equal feature_dataset.compounds.size, dataset.compounds.size p feature_dataset.compounds.size |