diff options
Diffstat (limited to 'test/fminer.rb')
| -rw-r--r-- | test/fminer.rb | 21 |
1 files changed, 4 insertions, 17 deletions
diff --git a/test/fminer.rb b/test/fminer.rb index e319b5e..649a78e 100644 --- a/test/fminer.rb +++ b/test/fminer.rb @@ -5,29 +5,16 @@ class FminerTest < MiniTest::Test def test_fminer_bbrc dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"hamster_carcinogenicity.csv") refute_nil dataset.id - feature_dataset = OpenTox::Algorithm::Fminer.bbrc :dataset => dataset + feature_dataset = OpenTox::Algorithm::Fminer.bbrc dataset + feature_dataset = Dataset.find feature_dataset.id assert_equal dataset.compounds.size, feature_dataset.compounds.size assert_equal 54, feature_dataset.features.size assert_equal "C-C-C=C", feature_dataset.features.first.smarts compounds = feature_dataset.compounds smarts = feature_dataset.features.collect{|f| f.smarts} match = OpenTox::Algorithm::Descriptor.smarts_count compounds, smarts - p smarts - compounds.each_with_index do |c,i| - p c.smiles - p match[i] - p feature_dataset.feature_values(c) - smarts.each_with_index do |s,j| - #unless match[i][j] == DataEntry.where(:dataset_id => feature_dataset.id, :compound_id => c.id, :feature_id => feature_dataset.features[j]).distinct(:value).first - #p c - #p s - #p feature_dataset.features[j] - #p match[i][j] - #p DataEntry.where(:dataset_id => feature_dataset.id, :compound_id => c.id, :feature_id => feature_dataset.features[j]).distinct(:value) - #end - - #assert_equal match[i][j], feature_dataset[c,feature_dataset.features[j]] - end + feature_dataset.data_entries.each_with_index do |fingerprint,i| + assert_equal match[i], fingerprint end dataset.delete |