diff options
Diffstat (limited to 'test/lazar-fminer.rb')
| -rw-r--r-- | test/lazar-fminer.rb | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/test/lazar-fminer.rb b/test/lazar-fminer.rb index ef17985..4f146c6 100644 --- a/test/lazar-fminer.rb +++ b/test/lazar-fminer.rb @@ -3,7 +3,7 @@ require_relative "setup.rb" class LazarFminerTest < MiniTest::Test def test_lazar_fminer - dataset = OpenTox::Dataset.new + dataset = OpenTox::Dataset.new dataset.upload File.join(DATA_DIR,"hamster_carcinogenicity.csv") assert_equal dataset.uri.uri?, true model_uri = OpenTox::Model::Lazar.create :dataset_uri => dataset.uri, :feature_generation_uri => File.join($algorithm[:uri],"fminer","bbrc") @@ -11,7 +11,7 @@ class LazarFminerTest < MiniTest::Test model = OpenTox::Model::Lazar.new model_uri assert_equal model.uri.uri?, true feature_dataset_uri = model[RDF::OT.featureDataset] - feature_dataset = OpenTox::Dataset.new feature_dataset_uri + feature_dataset = OpenTox::Dataset.new feature_dataset_uri assert_equal dataset.compounds.size, feature_dataset.compounds.size assert_equal 54, feature_dataset.features.size assert_equal '[#6&A]-[#6&A]-[#6&A]=[#6&A]', OpenTox::Feature.new(feature_dataset.features.first.uri).title @@ -21,13 +21,12 @@ class LazarFminerTest < MiniTest::Test :prediction => "false", :confidence => 0.25281385281385277 },{ - # lazar Parameter, min_frequency = 8 :compound => OpenTox::Compound.from_smiles("c1ccccc1NN"), :prediction => "false", :confidence => 0.3639589577089577 } ].each do |example| prediction_uri = model.predict :compound_uri => example[:compound].uri - puts prediction_uri + #puts prediction_uri prediction_dataset = OpenTox::Dataset.new prediction_uri assert_equal prediction_dataset.uri.uri?, true prediction = prediction_dataset.predictions.select{|p| p[:compound].uri == example[:compound].uri}.first @@ -37,7 +36,7 @@ class LazarFminerTest < MiniTest::Test end # make a dataset prediction - compound_dataset = OpenTox::Dataset.new + compound_dataset = OpenTox::Dataset.new compound_dataset.upload File.join(DATA_DIR,"EPAFHM.mini.csv") assert_equal compound_dataset.uri.uri?, true prediction_uri = model.predict :dataset_uri => dataset.uri |