diff options
Diffstat (limited to 'test/lazar-long.rb')
| -rw-r--r-- | test/lazar-long.rb | 21 |
1 files changed, 15 insertions, 6 deletions
diff --git a/test/lazar-long.rb b/test/lazar-long.rb index 8f59ec3..487a015 100644 --- a/test/lazar-long.rb +++ b/test/lazar-long.rb @@ -5,7 +5,7 @@ class LazarExtendedTest < MiniTest::Test def test_lazar_bbrc_ham_minfreq dataset = OpenTox::MeasuredDataset.new dataset.upload File.join(DATA_DIR,"hamster_carcinogenicity.csv") - model = OpenTox::Model::Lazar.create OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 5) + model = OpenTox::Model::Lazar.create OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 5) feature_dataset = OpenTox::CalculatedDataset.find model.feature_dataset_id assert_equal dataset.compounds.size, feature_dataset.compounds.size assert_equal 41, feature_dataset.features.size @@ -48,13 +48,22 @@ class LazarExtendedTest < MiniTest::Test end def test_lazar_kazius - # TODO find a solution for feature datasets > 16M (size limit in mongodb) - dataset = OpenTox::MeasuredDataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 100) + dataset = Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") + feature_dataset = Algorithm::Fminer.bbrc(dataset, :min_frequency => 100) assert_equal feature_dataset.compounds.size, dataset.compounds.size - model = OpenTox::Model::Lazar.create feature_dataset + model = Model::Lazar.create dataset, feature_dataset + #model = Model::Lazar.find('55b8e9c07a78383f6700017e') p model.id - dataset.delete + #prediction_times = [] + 2.times do + compound = Compound.from_smiles("Clc1ccccc1NN") + prediction = model.predict :compound => compound + p prediction.data_entries + assert_equal "1", prediction.data_entries.first.first + assert_in_delta 0.019858401199860445, prediction.data_entries.first.last, 0.001 + end + + #dataset.delete #feature_dataset.delete end |