diff options
Diffstat (limited to 'test/toxbank-investigation-sparql.rb')
| -rw-r--r-- | test/toxbank-investigation-sparql.rb | 37 |
1 files changed, 21 insertions, 16 deletions
diff --git a/test/toxbank-investigation-sparql.rb b/test/toxbank-investigation-sparql.rb index 8bc1335..e6630e0 100644 --- a/test/toxbank-investigation-sparql.rb +++ b/test/toxbank-investigation-sparql.rb @@ -342,24 +342,29 @@ class TBSPARQLTestExtended < MiniTest::Test assert inv_genes.include?("#{@@uri}:::http://onto.toxbank.net/isa/bii/data_types/microarray_derived_data:::q-value[Low.8hr-Control.8hr]:::http://onto.toxbank.net/isa/qvalue:::0.911237") end - def test_20_investigation_by_gene_and_pvalue - response = OpenTox::RestClientWrapper.get "#{$investigation[:uri]}/sparql/investigation_by_gene_and_pvalue", {:geneIdentifiers => "['entrez:3075', 'uniprot:P10809']", :value => "0.7"}, {:accept => "application/json", :subjectid => $pi[:subjectid]} - result = JSON.parse(response) - #puts response - inv = result["results"]["bindings"].map{|n| "#{n["investigation"]["value"]}"} - assert_equal 200, response.code - assert inv.include?("#{@@uri}") - end - - def test_21_investigation_by_gene_and_pvalue - response = OpenTox::RestClientWrapper.get "#{$investigation[:uri]}/sparql/investigation_by_gene_and_pvalue", {:geneIdentifiers => "['entrez:3075']", :value => "0.7"}, {:accept => "application/json", :subjectid => $pi[:subjectid]} - result = JSON.parse(response) - #puts response - inv = result["results"]["bindings"].map{|n| "#{n["investigation"]["value"]}"} - assert_equal 200, response.code - assert inv.include?("#{@@uri}") + def test_20_investigation_by_gene_and_value + # check for FC, pValue, qValue + ["FC", "pvalue", "qvalue"].each do |value_type| + response = OpenTox::RestClientWrapper.get "#{$investigation[:uri]}/sparql/investigation_by_gene_and_value", {:geneIdentifiers => "['entrez:3075', 'uniprot:P10809']", :value => "#{value_type}=0.7"}, {:accept => "application/json", :subjectid => $pi[:subjectid]} + result = JSON.parse(response) + #puts response + ["investigation", "datatype", "title", "value"].each do |v| + assert result["head"]["vars"].include?(v.to_s) + end + assert_equal 200, response.code + end end + def test_21_investigation_by_gene_and_value + # check valid request + assert_raises OpenTox::BadRequestError do + response = OpenTox::RestClientWrapper.get "#{$investigation[:uri]}/sparql/investigation_by_gene_and_value", {:geneIdentifiers => "['entrez:3075', 'uniprot:P10809']", :value => "FC0.7"}, {:accept => "application/json", :subjectid => $pi[:subjectid]} + end + assert_raises OpenTox::BadRequestError do + response = OpenTox::RestClientWrapper.get "#{$investigation[:uri]}/sparql/investigation_by_gene_and_value", {:geneIdentifiers => "['entrez:3075', 'uniprot:P10809']", :value => "DC=0.7"}, {:accept => "application/json", :subjectid => $pi[:subjectid]} + end + end + # delete investigation/{id} # @note expect code 200 def test_90_delete_investigation |