diff options
Diffstat (limited to 'test/upload.rb')
| -rw-r--r-- | test/upload.rb | 135 |
1 files changed, 135 insertions, 0 deletions
diff --git a/test/upload.rb b/test/upload.rb new file mode 100644 index 0000000..95c9e6b --- /dev/null +++ b/test/upload.rb @@ -0,0 +1,135 @@ +require File.join(File.expand_path(File.dirname(__FILE__)),"setup.rb") + +#TODO: check 4store entries/errors + +class UploadTest < Test::Unit::TestCase + + def setup + @tmpdir = File.join(File.dirname(__FILE__),"tmp") + FileUtils.mkdir_p @tmpdir + FileUtils.rm_r Dir[File.join @tmpdir, '*'] + end + + def test_01_get_all + response = `curl -k -i #{$toxbank_investigation[:uri]}` + assert_match /200/, response + end + + def test_02_get_inexisting + response = `curl -k -H "Accept:text/uri-list" -i -H "subjectid:#{@@subjectid}" #{$toxbank_investigation[:uri]}/foo`.chomp + assert_match /404/, response + end + + def test_03_valid_zip_upload + # upload + #["isa-tab-renamed.zip"].each do |f| + ["BII-I-1.zip","isa-tab-renamed.zip"].each do |f| + file = File.join File.dirname(__FILE__), "data/toxbank-investigation/valid", f + response = `curl -k -X POST -i -F file="@#{file};type=application/zip" -H "subjectid:#{@@subjectid}" #{$toxbank_investigation[:uri]}`.chomp + assert_match /202/, response + uri = response.split("\n")[-1] + t = OpenTox::Task.new(uri) + puts uri + assert t.running? + assert_match t.hasStatus, "Running" + t.wait + assert t.completed? + assert_match t.hasStatus, "Completed" + uri = t.resultURI + #`curl -k "#{uri}/metadata"` + metadata = `curl -k "subjectid:#{@@subjectid}" #{uri}/metadata` + assert_match /#{uri}/, metadata + zip = File.join @tmpdir,"tmp.zip" + #puts "curl -k -H 'Accept:application/zip' -H 'subjectid:#{@@subjectid}' #{uri} > #{zip}" + `curl -k -H "Accept:application/zip" -H "subjectid:#{@@subjectid}" #{uri} > #{zip}` + `unzip -o #{zip} -d #{@tmpdir}` + files = `unzip -l #{File.join File.dirname(__FILE__),"data/toxbank-investigation/valid",f}|grep txt|cut -c 31- | sed 's#^.*/##'`.split("\n") + files.each{|f| assert_equal true, File.exists?(File.join(File.expand_path(@tmpdir),f)) } + + # get isatab files + `curl -k -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}`.split("\n").each do |u| + unless u.match(/[n3|zip]$/) + response = `curl -k -i -H Accept:text/tab-separated-values -H "subjectid:#{@@subjectid}" #{u}` + assert_match /HTTP\/1.1 200 OK/, response.to_s.encode!('UTF-8', 'UTF-8', :invalid => :replace) + end + end + + # delete + response = `curl -k -i -X DELETE -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /200/, response + response = `curl -k -i -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /404/, response + end + end + + def test_04_invalid_zip_upload + file = File.join File.dirname(__FILE__), "data/toxbank-investigation/invalid/isa_TB_ACCUTOX.zip" + response = `curl -k -X POST -i -F file="@#{file};type=application/zip" -H "subjectid:#{@@subjectid}" #{$toxbank_investigation[:uri]}`.chomp + assert_match /202/, response + uri = response.split("\n")[-1] + t = OpenTox::Task.new(uri) + t.wait + assert_match t.hasStatus, "Error" + # TODO: test errorReport, rdf output of tasks has to be fixed for that purpose + end + +=begin + def test_rest_client_wrapper + ["BII-I-1.zip","isa-tab-renamed.zip"].each do |f| + file = File.join File.dirname(__FILE__), "toxbank-investigation","data/valid", f + investigation_uri = OpenTox::RestClientWrapper.post $toxbank_investigation[:uri], {:file => File.read(file),:name => file}, {:content_type => "application/zip", :subjectid => @@subjectid} + puts investigation_uri + zip = File.join @tmpdir,"tmp.zip" + #puts "curl -k -H 'Accept:application/zip' -H 'subjectid:#{@@subjectid}' #{uri} > #{zip}" + `curl -k -H "Accept:application/zip" -H "subjectid:#{@@subjectid}" #{uri} > #{zip}` + `unzip -o #{zip} -d #{@tmpdir}` + files = `unzip -l toxbank-investigation/data/valid/#{f}|grep txt|cut -c 31- | sed 's#^.*/##'`.split("\n") + files.each{|f| assert_equal true, File.exists?(File.join(File.expand_path(@tmpdir),f)) } + + # get isatab files + `curl -k -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}`.split("\n").each do |u| + unless u.match(/n3$/) + response = `curl -k -i -H Accept:text/tab-separated-values -H "subjectid:#{@@subjectid}" #{u}` + assert_match /HTTP\/1.1 200 OK/, response.to_s.encode!('UTF-8', 'UTF-8', :invalid => :replace) + end + end + + # delete + response = `curl -k -i -X DELETE -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /200/, response + response = `curl -k -i -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /404/, response + end + end +=end + +=begin + def test_ruby_api + ["BII-I-1.zip","isa-tab-renamed.zip"].each do |f| + file = File.join File.dirname(__FILE__), "data/valid", f + investigation = OpenTox::Investigation.create $toxbank_investigation[:uri], :file => file, :headers => {:content_type => "application/zip", :subjectid => @@subjectid} + zip = File.join @tmpdir,"tmp.zip" + #puts "curl -k -H 'Accept:application/zip' -H 'subjectid:#{@@subjectid}' #{uri} > #{zip}" + `curl -k -H "Accept:application/zip" -H "subjectid:#{@@subjectid}" #{uri} > #{zip}` + `unzip -o #{zip} -d #{@tmpdir}` + files = `unzip -l data/valid/#{f}|grep txt|cut -c 31- | sed 's#^.*/##'`.split("\n") + files.each{|f| assert_equal true, File.exists?(File.join(File.expand_path(@tmpdir),f)) } + + # get isatab files + `curl -k -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}`.split("\n").each do |u| + unless u.match(/n3$/) + response = `curl -k -i -H Accept:text/tab-separated-values -H "subjectid:#{@@subjectid}" #{u}` + assert_match /HTTP\/1.1 200 OK/, response.to_s.encode!('UTF-8', 'UTF-8', :invalid => :replace) + end + end + + # delete + response = `curl -k -i -X DELETE -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /200/, response + response = `curl -k -i -H "Accept:text/uri-list" -H "subjectid:#{@@subjectid}" #{uri}` + assert_match /404/, response + end + end +=end + +end |