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require_relative "setup.rb"
class FminerTest < MiniTest::Test
def test_fminer_multicell
# TODO aborts, probably fminer
dataset = OpenTox::MeasuredDataset.new
#multi_cell_call.csv
dataset.upload File.join(DATA_DIR,"multi_cell_call.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15)
dataset.delete
feature_dataset.delete
end
def test_fminer_isscan
dataset = OpenTox::MeasuredDataset.new
dataset.upload File.join(DATA_DIR,"ISSCAN-multi.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15)
assert_equal feature_dataset.compounds.size, dataset.compounds.size
p feature_dataset
dataset.delete
feature_dataset.delete
end
def test_fminer_kazius
dataset = OpenTox::MeasuredDataset.from_csv_file File.join(DATA_DIR,"kazius.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset, :min_frequency => 200)
#feature_dataset = OpenTox::Algorithm::Fminer.bbrc(:dataset => dataset)#, :min_frequency => 15)
assert_equal feature_dataset.compounds.size, dataset.compounds.size
p feature_dataset.compounds.size
p feature_dataset.features.size
dataset.delete
feature_dataset.delete
end
end
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