1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
|
require_relative "setup.rb"
require 'capybara'
require 'capybara-webkit'
ENV['DISPLAY'] ="localhost:1.0"
Capybara.register_driver :webkit do |app|
Capybara::Webkit::Driver.new(app).tap{|d| d.browser.ignore_ssl_errors}
end
Capybara.default_driver = :webkit
Capybara.default_wait_time = 20
Capybara.javascript_driver = :webkit
Capybara.run_server = false
Capybara.app_host =$lazar_gui[:uri]
begin
puts "Service URI is: #{$lazar_gui[:uri]}"
rescue
puts "Configuration Error: $aop[:uri] is not defined in: " + File.join(ENV["HOME"],".opentox","config","test.rb")
exit
end
class LazarWebTest < MiniTest::Test
def self.test_order
:sorted
end
include Capybara::DSL
def test_00_xsetup
`Xvfb :1 -screen 0 1024x768x16 2>/dev/null &`
sleep 2
end
def test_01_visit
visit('/predict')
assert page.has_content?('Lazar Toxicity Predictions')
assert page.has_content?('DSSTox Carcinogenic Potency DBS ActivityOutcome Hamster (CPDBAS)')
end
def test_02_insert_wrong_smiles
visit('/')
page.fill_in 'identifier', :with => "blahblah"
check('selection[Hamster]')
first(:button, '>>').click
assert page.has_content?('Attention')
end
def test_03_check_all_links_exists
visit('/')
links = ["Details", "SMILES", "toxicology gmbh 2004 - #{Time.now.year.to_s}"]
links.each{|l| puts l.to_s; assert page.has_link?(l), "true"}
end
def test_04_predict
visit('/')
page.fill_in('identifier', :with => "NNc1ccccc1")
check('selection[Hamster]')
first(:button, '>>').click
assert page.has_content?('DSSTox Carcinogenic Potency DBS ActivityOutcome Hamster (CPDBAS)'), "true"
assert page.has_content?('Type: classification'), "true"
assert page.has_content?('Result: inactive'), "true"
assert page.has_content?('Confidence: 0.35'), "true"
assert page.has_content?('Neighbors'), "true"
assert page.has_link?('Significant fragments'), "true"
assert page.has_link?('v'), "true"
# open 'significant fragments' view
find_link('linkPredictionSf').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('Predominantly in compounds with activity "inactive"'), "true"
assert page.has_content?('Predominantly in compounds with activity "active"'), "true"
assert page.has_content?('p value'), "true"
# inactive
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]-[#7&A]'), "true"
assert page.has_content?('0.98674'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99605'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99791'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99985'), "true"
# active
assert page.has_content?('[#7&A]-[#7&A]'), "true"
assert page.has_content?('0.99993'), "true"
# close 'significant fragments' view
find_button('closebutton').click
end
find_link('link0').click
sleep 2
assert page.has_content?('Compound'), "true"
assert page.has_content?('Measured Activity'), "true"
assert page.has_content?('Similarity'), "true"
assert page.has_content?('Supporting information'), "true"
first(:link, 'linkCompound').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('SMILES:'), "true"
assert page.has_content?('c1ccc(cc1)NN'), "true"
assert page.has_content?('InChI:'), "true"
assert page.has_content?('1S/C6H8N2/c7-8-6-4-2-1-3-5-6/h1-5,8H,7H2'), "true"
assert page.has_content?('Names:'), "true"
assert page.has_content?('Phenylhydrazine'), "true"
assert page.has_link?('PubChem read across'), "true"
end
end
def test_99_kill
`pidof Xvfb|xargs kill`
end
end
|
