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require_relative "setup.rb"
begin
puts "Service URI is: #{$model[:uri]}"
rescue
puts "Configuration Error: $model[:uri] is not defined in: " + File.join(ENV["HOME"],".opentox","config","test.rb")
exit
end
class ModelTest < MiniTest::Test
def test_01_create_and_set_parameters
a = OpenTox::Model::Generic.new
a.title = "test model"
a.parameters = [
{RDF::DC.title => "test", RDF::OT.paramScope => "mandatory"},
{RDF::DC.title => "test2", RDF::OT.paramScope => "optional"}
]
assert_equal 2, a.parameters.size
p = a.parameters.collect{|p| p if p[RDF::DC.title] == "test"}.compact.first
assert_equal "mandatory", p[RDF::OT.paramScope]
a[RDF::OT.featureCalculationAlgorithm] = "http://webservices.in-silico.ch/algorithm/substucture/match_hits"
a[RDF::OT.predictionAlgorithm] = "http://webservices.in-silico.ch/algorithm/regression/local_svm"
a[RDF::OT.similarityAlgorithm] = "http://webservices.in-silico.ch/algorithm/similarity/tanimoto"
a[RDF::OT.trainingDataset] = "http://webservices.in-silico.ch/dataset/4944"
a[RDF::OT.dependentVariables] = "http://webservices.in-silico.ch/feature/LC50_mmol"
a[RDF::OT.featureDataset] = "http://webservices.in-silico.ch/dataset/4964"
a.put
a = OpenTox::Model::Generic.new a.uri
assert_equal "test model", a.title
assert_equal 2, a.parameters.size
p = a.parameters.collect{|p| p if p[RDF::DC.title] == "test"}.compact.first
assert_equal "mandatory", p[RDF::OT.paramScope].to_s
#a.run :compound_uri => OpenTox::Compound.from_smiles("c1ccccc1NN").uri
a.delete
end
def test_02_create_and_edit_metadata
a = OpenTox::Model::Generic.new
a.title = "test model"
a.parameters = [
{RDF::DC.title => "test", RDF::OT.paramScope => "mandatory"},
{RDF::DC.title => "test2", RDF::OT.paramScope => "optional"}
]
assert_equal 2, a.parameters.size
p = a.parameters.collect{|p| p if p[RDF::DC.title] == "test"}.compact.first
assert_equal "mandatory", p[RDF::OT.paramScope]
a[RDF::OT.featureCalculationAlgorithm] = "http://webservices.in-silico.ch/algorithm/substucture/match_hits"
a[RDF::OT.predictionAlgorithm] = "http://webservices.in-silico.ch/algorithm/regression/local_svm"
a[RDF::OT.similarityAlgorithm] = "http://webservices.in-silico.ch/algorithm/similarity/tanimoto"
a[RDF::OT.trainingDataset] = "http://webservices.in-silico.ch/dataset/4944"
a[RDF::OT.dependentVariables] = "http://webservices.in-silico.ch/feature/LC50_mmol"
a[RDF::OT.featureDataset] = "http://webservices.in-silico.ch/dataset/4964"
a.put
a = OpenTox::Model::Generic.new a.uri
assert_equal "test model", a.title
assert_equal 2, a.parameters.size
p = a.parameters.collect{|p| p if p[RDF::DC.title] == "test"}.compact.first
assert_equal "mandatory", p[RDF::OT.paramScope].to_s
#a.run :compound_uri => OpenTox::Compound.from_smiles("c1ccccc1NN").uri
b = OpenTox::Model::Generic.new a.uri
b.metadata
b.parameters
b.metadata[RDF.type] << "http://www.opentox.org/echaEndpoints.owl#Endpoint"
b.put
c = OpenTox::Model::Generic.new b.uri
c.metadata
assert c.type.to_s =~ /Endpoint/
puts c.uri
# necessary since model.all method is abolished
urilist = `curl -k GET -H accept:text/plain -H 'subjectid:#{OpenTox::RestClientWrapper.subjectid}' #{$model[:uri]}`.chomp
assert_match c.uri, urilist
a.delete
urilist = `curl -k GET -H accept:text/plain -H 'subjectid:#{OpenTox::RestClientWrapper.subjectid}' #{$model[:uri]}`.chomp
refute_match c.uri, urilist
end
end
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