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# TODO: check json specification at https://github.com/opentox-api/api-specification/issues/2
require_relative "setup.rb"
class DatasetTest < MiniTest::Test
=begin
# TODO: and add Egons example
def test_sdf_with_multiple_features
@dataset = OpenTox::Dataset.new nil
@dataset.upload "#{DATA_DIR}/CPDBAS_v5c_1547_29Apr2008part.sdf"
assert_equal OpenTox::Dataset, @dataset.class
puts @dataset.features.size
puts @dataset.compounds.size
@dataset.delete
end
# TODO: create unordered example file with working references
# e.g. download from ambit, upload
def test_create_from_ntriples
d = OpenTox::Dataset.new nil
d.upload File.join(DATA_DIR,"hamster_carcinogenicity.ntriples")
assert_equal OpenTox::Dataset, d.class
assert_equal "hamster_carcinogenicity.ntriples", d.title
assert_equal 1, d.features.size
assert_equal 76, d.compounds.size
assert_equal 76, d.data_entries.size
d.delete
assert_equal false, URI.accessible?(d.uri)
end
=end
def test_head_id
d = OpenTox::Dataset.new nil
d.title = "head test"
d.put
response = `curl -Lki -H subjectid:#{OpenTox::RestClientWrapper.subjectid} #{d.uri}`
assert_match /200/, response
d.delete
end
def test_from_xls
d = OpenTox::Dataset.new
d.upload "#{DATA_DIR}/hamster_carcinogenicity.xls"
assert_equal OpenTox::Dataset, d.class
assert_equal 1, d.features.size
assert_equal 85, d.compounds.size
assert_equal 85, d.data_entries.size
d.delete
#assert_equal false, URI.accessible?(d.uri)
end
end
class DatasetRestTest < MiniTest::Test
def test_01_get_uri_list
result = OpenTox::RestClientWrapper.get $dataset[:uri], {}, { :accept => 'text/uri-list', :subjectid => SUBJECTID }
assert_equal 200, result.code
end
# check if default response header is text/uri-list
def test_02_get_datasetlist_type
result = OpenTox::RestClientWrapper.get $dataset[:uri], {}, { :accept => 'text/uri-list', :subjectid => SUBJECTID }
assert_equal "text/uri-list", result.headers[:content_type]
end
# check post to investigation service without file
def test_10_post_dataset_400_no_file
#result = OpenTox::RestClientWrapper.post $dataset[:uri], {}, { :subjectid => $pi[:subjectid] }
#assert_equal 200, result.code
end
def test_11_post_dataset
response = OpenTox::RestClientWrapper.post $dataset[:uri], {:file => File.join(File.dirname(__FILE__), "data", "hamster_carcinogenicity.csv") }, { :content_type => "text/csv", :subjectid => $pi[:subjectid] }
assert_equal 200, response.code
task_uri = response.chomp
puts task_uri
task = OpenTox::Task.new task_uri
task.wait
uri = task.resultURI
puts uri
@@uri = URI(uri)
end
end
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