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authorgebele <gebele@in-silico.ch>2015-02-03 16:38:00 +0100
committergebele <gebele@in-silico.ch>2015-02-03 16:38:00 +0100
commit0e9c8b75041cf3f081004f0e04d376f9ffca0c09 (patch)
tree8fd71a6d5abca6ded885f16adf987c3f13ce0ea4
parent9542275de949bd10ecffe7fb2e5744841daa5685 (diff)
updated about this service text
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});
%div{:style => "align:justify;padding:1em;"}
+ %h3
+ Predict targets potentially affected by a given chemical structure.
+ Enter a chemical name, smiles structure, etc and press "Search" to obtain search results and predictions. |
+ The system will search the <a href="http://pubchem.ncbi.nlm.nih.gov/">PubChem</a> database for |
+ (i) experimental data of the query compound and |
+ (ii) structurally similar compounds (neighbors) and their experimental data. |
+ Predictions for the query compound are derived from the neighbors experimental data using an automated |
+ read-across algorithm.
+ %br
+ %br
+ The results page is organized according to the following dimensions:
%dl
%dt
- (experimental)
+ Gene/protein targets vs. other assays:
%dd
- Filtered experimental data from pubchem database.
+ PubChem Assays with known Gene/Protein targets are listed in the first column, assays without known |
+ targets are in the "Other assays" column.
%br
%br
%dt
- (read across)
+ Active vs. inactive targets/assays:
%dd
- Predictions - results of processed pubchem data.
+ Targets/assays with positive outcomes are listed as targets/active assays, negative outcomes are |
+ filed under non-targets/ inactive assays.
%br
%br
%dt
- Predictions relationship
+ Experimental vs. read across:
%dd
- Similar compounds, predicted assays and predicted targets are related considering relevant data.
- If data is insufficent there will be no result displayed.
+ Experimental data for the query compound is labelled with "experimental", read-across predictions |
+ are labelled with "read across". In case of insufficient data no results will be displayed.i
+ %br
+ %br
+ %dt
+ Similar compounds
+ %dd
+ Detailed information about the compounds used for read across predictions (and their experimental data)
+ %br
+ <small>Source code for the project can be obtained from <a href="https://github.com/opentox/pubchem-read-across">Github</a></small>.
%form{:name => "form", :action => '/search', :method => "GET"}
%fieldset