From f15edc09f338b410fb4e1d4c222515d1233a9e81 Mon Sep 17 00:00:00 2001
From: rautenberg <rautenberg@in-silico.ch>
Date: Wed, 14 Sep 2016 14:19:10 +0200
Subject: Add method chang_attributes to edit attributes of a tags 6. and 7.
 (1,2,3,4)

---
 .gitignore         |  1 +
 README.md          |  3 +++
 VERSION            |  2 +-
 lib/qmrf-report.rb | 18 ++++++++++++++++++
 4 files changed, 23 insertions(+), 1 deletion(-)

diff --git a/.gitignore b/.gitignore
index 1931eb9..2ac3ede 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
 *.*~
 *~
+tmp/
diff --git a/README.md b/README.md
index 2575aec..b13b4e0 100644
--- a/README.md
+++ b/README.md
@@ -20,6 +20,9 @@ report = OpenTox::QMRFReport.new
 # add a title
 report.value "QSAR_title", "My QSAR Title"
 
+# change 6.2 'Available information for the training set' set inchi and smiles to Yes
+report.change_attributes "training_set_data", {:inchi => "Yes", :smiles => "Yes"}
+
 # add a publication to the publication catalog
 report.change_catalog :publications_catalog, :publications_catalog_1, {:title => "MyName M (2016) My Publication Title, QSAR News, 10, 14-22", :url => "http://myqsarnewsmag.dom"}
 
diff --git a/VERSION b/VERSION
index bcab45a..81340c7 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-0.0.3
+0.0.4
diff --git a/lib/qmrf-report.rb b/lib/qmrf-report.rb
index 3ec1fdd..a83bf6d 100644
--- a/lib/qmrf-report.rb
+++ b/lib/qmrf-report.rb
@@ -11,6 +11,7 @@ module OpenTox
   #  require "qsar-report"
   #  report = OpenTox::QMRFReport.new
   #  report.value "QSAR_title", "My QSAR Title"
+  #  report.change_attributes "training_set_data", {:inchi => "Yes", :smiles => "Yes"}
   #  report.change_catalog :publications_catalog, :publications_catalog_1, {:title => "MyName M (2016) My Publication Title, QSAR News, 10, 14-22", :url => "http://myqsarnewsmag.dom"}
   #  report.ref_catalog :bibliography, :publications_catalog, :publications_catalog_1
   #  puts report.to_xml
@@ -20,6 +21,8 @@ module OpenTox
     SCHEMA_FILE   = File.join(File.dirname(__FILE__),"template/qmrf.xsd")
     # QMRF XML Template file
     TEMPLATE_FILE = File.join(File.dirname(__FILE__),"template/qmrf.xml")
+    # QMRF XML tags with attributes to edit
+    ATTRIBUTE_TAGS = ["training_set_availability", "training_set_data", "training_set_descriptors", "dependent_var_availability", "validation_set_availability", "validation_set_data", "validation_set_descriptors", "validation_dependent_var_availability"]
     
     attr_accessor :xml, :report
 
@@ -55,6 +58,21 @@ module OpenTox
       t.content
     end
 
+    # Set attributes of an report XML tag
+    # e.G.: <training_set_data cas="Yes" chapter="6.2" chemname="Yes" formula="Yes" help="" inchi="Yes" mol="Yes" name="Available information for the training set" smiles="Yes"/>
+    #@example change_attributes
+    #  report.change_attributes "training_set_data", {:inchi => "Yes", :smiles => "Yes"}
+    # @param [String] key Nodename e.g.: "training_set_data"
+    # @param [Hash] valuehash Key-Value Hash of tag attributes to change.
+    # @return [Error]  returns Error message if fails
+    def change_attributes tagname, valuehash
+      raise "Can not edit the attributes of tag: #{tagname}." unless ATTRIBUTE_TAGS.include? tagname
+      tag = @report.at_css tagname
+      valuehash.each do |key, value|
+        tag.attributes["#{key}"].value = value
+      end
+    end
+
     # Change a catalog
     # @param [String] catalog Name of the catalog - One of "software_catalog", "algorithms_catalog", "descriptors_catalog", "endpoints_catalog", "publications_catalog", "authors_catalog" in QMRF v1.3
     # @param [String] id Single entry node in the catalog e.G.: "<software contact='mycontact@mydomain.dom' description="My QSAR Software " id="software_catalog_2" name="MySoftware" number="" url="https://mydomain.dom"/>
-- 
cgit v1.2.3