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authorAndreas Maunz <andreas@maunz.de>2012-02-23 16:07:26 +0100
committerAndreas Maunz <andreas@maunz.de>2012-02-23 16:07:26 +0100
commite7787778a9c307e8ca2400d7d296a9f7880b41ab (patch)
tree1a998dc7fc02012ae5bc21f58828117f58a9baed
parentff0798375a0a694296919715a09a80578df1d427 (diff)
Adjusted tests to jl
-rw-r--r--dataset.rb7
-rw-r--r--lazar.rb6
2 files changed, 3 insertions, 10 deletions
diff --git a/dataset.rb b/dataset.rb
index 6d17756..8cf384a 100644
--- a/dataset.rb
+++ b/dataset.rb
@@ -29,13 +29,6 @@ class DatasetTest < Test::Unit::TestCase
#@new_dataset.delete
end
-# def test_get_pc
-# ds_uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/EPAFHM.csv")} ,{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp
-# puts "DS: #{ds_uri}"
-# fds_uri = OpenTox::Algorithm.pc_descriptors( { :dataset_uri => ds_uri, :pc_type => "constitutional" } )
-# puts "FDS: #{fds_uri}"
-# end
-
def test_save_external
@dataset = OpenTox::Dataset.find "http://apps.ideaconsult.net:8080/ambit2/dataset/2698"
diff --git a/lazar.rb b/lazar.rb
index 4a77a82..bf2baf0 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -65,9 +65,9 @@ class LazarTest < Test::Unit::TestCase
def test_create_regression_svm_pc_model
create_model :dataset_uri => @@regression_training_dataset.uri, :feature_dataset_uri => @@regression_feature_dataset.uri, :pc_type => "constitutional"
predict_compound OpenTox::Compound.from_smiles("c1ccccc1NN")
- assert_in_delta @predictions.first.value(@compounds.first), 7.8, 0.1
- assert_equal 0.603, @predictions.first.confidence(@compounds.first).round_to(3)
- assert_equal 74, @predictions.first.neighbors(@compounds.first).size
+ assert_in_delta @predictions.first.value(@compounds.first), 12.81, 0.1
+ assert_equal 0.531, @predictions.first.confidence(@compounds.first).round_to(3)
+ assert_equal 91, @predictions.first.neighbors(@compounds.first).size
cleanup
end