sdf upload test added, toxcreate upload test not yet working (gui upload works)

2 files changed, 28 insertions, 0 deletions

diff --git a/dataset.rb b/dataset.rb
index 17d15f2..c10b7a1 100644
--- a/dataset.rb
+++ b/dataset.rb
@@ -6,6 +6,7 @@ require 'validate-owl'
 class DatasetTest < Test::Unit::TestCase
 
   def setup
+    @@subjectid = nil
     @datasets = {
       @@regression_training_dataset.uri => nil,
       @@classification_training_dataset.uri => {
@@ -64,6 +65,17 @@ class DatasetTest < Test::Unit::TestCase
     hamster_carc?
   end
 
+  def test_sdf_with_multiple_features
+    uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], File.read("data/CPDBAS_v5c_1547_29Apr2008part.sdf") ,{:accept => "text/uri-list",:content_type => "chemical/x-mdl-sdfile", :subjectid => @@subjectid}).to_s.chomp
+    assert_kind_of URI::HTTP, URI.parse(uri)
+    #puts uri
+    #uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], File.read("/dataCPDBAS_v5c_1547_29Apr2008.sdf") ,{:accept => "text/uri-list",:content_type => "chemical/x-mdl-sdfile", :subjectid => @@subjectid}).to_s.chomp
+    #@dataset = OpenTox::Dataset.find uri, @@subjectid
+    ##@dataset = OpenTox::Dataset.new uri
+    #@dataset.load_all @@subjectid
+    #hamster_carc?
+  end
+
   def test_rest_csv
     uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/hamster_carcinogenicity.csv")} ,{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp
     @dataset = OpenTox::Dataset.new uri, @@subjectid
diff --git a/toxcreate.rb b/toxcreate.rb
index a298c9c..0853bf6 100644
--- a/toxcreate.rb
+++ b/toxcreate.rb
@@ -168,6 +168,22 @@ class ToxCreateTest < Test::Unit::TestCase
       click_on "Create model"
     end
   end
+  # raises capybara errors, but gui works from browser
+  def test_11_toxcreate_sdf # works only with akephalos
+    Capybara.current_driver = :akephalos 
+    #login(@browser, @user, @password)
+    visit CONFIG[:services]["opentox-toxcreate"]
+    assert page.has_content?('Upload training data')
+    attach_file('file', "./data/hamster_carcinogenicity.sdf")
+    click_on "Create model"
+    assert first("h2").has_content? "hamster_carcinogenicity"
+    time = 0
+    while first(".model_status").has_no_content?("Completed") do
+      sleep 5
+      time +=5
+    end
+    assert first(".model_status").has_content?("Completed")
+  end
 =end