diff options
| author | mr <mr@mrautenberg.de> | 2011-01-12 16:43:38 +0100 |
|---|---|---|
| committer | mr <mr@mrautenberg.de> | 2011-01-12 16:43:38 +0100 |
| commit | 08fcc17d5fa809fb497031dad3578a924d16a496 (patch) | |
| tree | 0cce9c3cde690608901c5ee8719bc97c96dd4e9f | |
| parent | 5527fc0726560448350f5c592eb1ae2f07309a57 (diff) | |
fminer A&A for rapper call prediction
| -rw-r--r-- | fminer.rb | 16 |
1 files changed, 8 insertions, 8 deletions
@@ -10,8 +10,8 @@ class FminerTest < Test::Unit::TestCase def test_bbrc feature = @@classification_training_dataset.features.keys.first dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s - d =OpenTox::Dataset.new dataset_uri - d.load_features + d =OpenTox::Dataset.new dataset_uri, @@subjectid + d.load_features(@@subjectid) assert_equal 41, d.features.size #validate_owl d.delete(@@subjectid) @@ -20,8 +20,8 @@ class FminerTest < Test::Unit::TestCase def test_last feature = @@classification_training_dataset.features.keys.first dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s - d =OpenTox::Dataset.new dataset_uri - d.load_features + d =OpenTox::Dataset.new dataset_uri, @@subjectid + d.load_features(@@subjectid) assert_equal 36, d.features.size #validate_owl d.delete(@@subjectid) @@ -30,8 +30,8 @@ class FminerTest < Test::Unit::TestCase def test_regression_bbrc feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol" dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s - d =OpenTox::Dataset.new dataset_uri - d.load_features + d =OpenTox::Dataset.new dataset_uri, @@subjectid + d.load_features(@@subjectid) assert_equal 222, d.features.size d.delete(@@subjectid) end @@ -39,8 +39,8 @@ class FminerTest < Test::Unit::TestCase def test_regression_last feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol" dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s - d =OpenTox::Dataset.new dataset_uri - d.load_features + d =OpenTox::Dataset.new dataset_uri, @@subjectid + d.load_features(@@subjectid) assert_equal 16, d.features.size d.delete(@@subjectid) end |