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author | mguetlein <martin.guetlein@gmail.com> | 2011-05-09 16:37:53 +0200 |
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committer | mguetlein <martin.guetlein@gmail.com> | 2011-05-09 16:37:53 +0200 |
commit | 6e64ca8e9a058f0714ce8de2f0a16e0a7e9bf437 (patch) | |
tree | c5cbc5addf135e1c0b189ad3d5e459397a186539 | |
parent | 6f89d7448d861f665d6c506e27db31984bd62808 (diff) | |
parent | adc6cba3b1431c59ee2fa9dee0b4b7b2b8f5b29f (diff) |
Merge branch 'development' of github.com:opentox/test into development
-rw-r--r-- | fminer.rb | 21 |
1 files changed, 11 insertions, 10 deletions
@@ -16,10 +16,10 @@ class FminerTest < Test::Unit::TestCase def test_regression_bbrc feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol" - dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s + dataset_uri = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid, :feature_type=>"paths"}).to_s d =OpenTox::Dataset.new dataset_uri, @@subjectid d.load_features(@@subjectid) - assert_equal 1356, d.features.size + assert_equal 185, d.features.size d.delete(@@subjectid) end @@ -32,13 +32,14 @@ class FminerTest < Test::Unit::TestCase d.delete(@@subjectid) end - def test_regression_last - feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol" - dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s - d =OpenTox::Dataset.new dataset_uri, @@subjectid - d.load_features(@@subjectid) - assert_equal 4, d.features.size - d.delete(@@subjectid) - end +# Deactivated by AM because of efficiency problems (does not return) +# def test_regression_last +# feature = File.join @@regression_training_dataset.uri,"feature/LC50_mmol" +# dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@regression_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s +# d =OpenTox::Dataset.new dataset_uri, @@subjectid +# d.load_features(@@subjectid) +# assert_equal 4, d.features.size +# d.delete(@@subjectid) +# end end |