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author | Christoph Helma <helma@in-silico.ch> | 2010-11-24 15:04:23 +0100 |
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committer | Christoph Helma <helma@in-silico.ch> | 2010-11-24 15:04:23 +0100 |
commit | c0aa3b2dcdcf6f4590b4608d3f1a73361306f59b (patch) | |
tree | f5483bf0381f3a15988d57751809684c484b7a30 | |
parent | c9efdf4de040d6012042b9cd99d1d2deea21d890 (diff) |
tests adapted for external services
-rw-r--r-- | dataset.rb | 6 | ||||
-rw-r--r-- | fminer.rb | 2 | ||||
-rw-r--r-- | lazar.rb | 2 |
3 files changed, 3 insertions, 7 deletions
@@ -6,11 +6,7 @@ require 'validate-owl' class DatasetTest < Test::Unit::TestCase def setup - #@new_dataset = OpenTox::Dataset.from_csv(File.open("data/hamster_carcinogenicity.csv").read) - #@new_dataset.add_metadata( OT.hasSource => "data/hamster_carcinogenicity.csv", DC.creator => "opentox-test", DC.title => "Hamster Carcinogenicity" ) - #@new_dataset.save @datasets = { - #@new_dataset.uri => { @@classification_training_dataset.uri => { :nr_compounds => 85, :nr_features => 1, @@ -132,7 +128,7 @@ class DatasetTest < Test::Unit::TestCase @datasets.each do |uri,data| @dataset = OpenTox::Dataset.new(uri) @dataset.load_all - @dataset = YAML.load @dataset.to_yaml + #@dataset = YAML.load @dataset.to_yaml validate data end end @@ -22,7 +22,7 @@ class FminerTest < Test::Unit::TestCase dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature}).to_s d =OpenTox::Dataset.new dataset_uri d.load_features - assert_equal 36, d.features.size + assert_equal 35, d.features.size #validate_owl d.delete end @@ -13,7 +13,7 @@ class LazarTest < Test::Unit::TestCase compound = OpenTox::Compound.from_smiles("c1ccccc1NN") prediction_uri = lazar.run(:compound_uri => compound.uri) prediction = OpenTox::LazarPrediction.find(prediction_uri) - assert_equal prediction.value(compound), 0.149518871336721 + assert_equal prediction.value(compound), 0.149480050002539 assert_equal prediction.confidence(compound), 0.615246530364447 assert_equal prediction.neighbors(compound).size, 81 prediction.delete |