Created new feature datasets (nominal features removed) with rfe

(method='repeatedcv', repeats=10, number=10,  ntree=100).

1 files changed, 25 insertions, 26 deletions

diff --git a/cv/scripts/logs/LOAEL_loo.log b/cv/scripts/logs/LOAEL_loo.log
index 4b099f9..1d59a37 100644
--- a/cv/scripts/logs/LOAEL_loo.log
+++ b/cv/scripts/logs/LOAEL_loo.log
@@ -1,65 +1,64 @@
-20120312_13_: LOAEL constitutional local_svm_regression 1
+20120314_10_: LOAEL constitutional local_svm_regression 1
 ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL constitutional local_svm_regression 1
 datasets.yaml exists
---- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58030
+--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76166
 --- 
 :algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar
-:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58030
+:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76166
 :loo: true
 :dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9
 :prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day
-http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/151
-http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/211
+http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/186
+http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/264
 
-20120312_14_: LOAEL electronic,cpsa local_svm_regression 1
+20120313_21_: LOAEL electronic,cpsa local_svm_regression 1
 ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL electronic,cpsa local_svm_regression 1
 datasets.yaml exists
---- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58026
+--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76163
 --- 
 :algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar
-:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58026
+:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76163
 :loo: true
 :dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9
 :prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day
-http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/153
-http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/213
+http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/176
+http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/260
 
-20120312_14_: LOAEL topological local_svm_regression 1
+20120313_21_: LOAEL topological local_svm_regression 1
 ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL topological local_svm_regression 1
 datasets.yaml exists
---- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58027
+--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76164
 --- 
 :algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar
-:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58027
+:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76164
 :loo: true
 :dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9
 :prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day
-http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/154
-http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/214
+http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/179
+http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/262
 
-20120309_17_: LOAEL joelib local_svm_regression 1
+20120313_21_: LOAEL joelib local_svm_regression 1
 ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL joelib local_svm_regression 1
 datasets.yaml exists
---- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58028
+--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76165
 --- 
 :algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar
-:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58028
+:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76165
 :loo: true
 :dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9
 :prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day
-http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/139
-http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/190
+http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/184
+http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/261
 
-20120309_17_: LOAEL all_pc local_svm_regression 1
+20120313_21_: LOAEL all_pc local_svm_regression 1
 ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL all_pc local_svm_regression 1
 datasets.yaml exists
---- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58031
+--- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76167
 --- 
 :algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar
-:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/58031
+:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/76167
 :loo: true
 :dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9
 :prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day
-http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/140
-http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/191
-
+http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/185
+http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/263