Initial sketch of unit tests, cucumber tests are obsolete

1 files changed, 63 insertions, 0 deletions

diff --git a/fminer.rb b/fminer.rb
new file mode 100644
index 0000000..666c00b
--- /dev/null
+++ b/fminer.rb
@@ -0,0 +1,63 @@
+require 'rubygems'
+require 'opentox-ruby-api-wrapper'
+require 'test/unit'
+require 'validate-owl.rb'
+
+class FminerTest < Test::Unit::TestCase
+
+  def setup
+    @dataset = OpenTox::Dataset.new "http://localhost/dataset/1"
+    @feature = "http://localhost/dataset/1/feature/Hamster%20Carcinogenicity"
+    @bbrc = OpenTox::Algorithm::Generic.new "http://localhost/algorithm/fminer/bbrc"
+    @last = OpenTox::Algorithm::Generic.new "http://localhost/algorithm/fminer/last"
+  end
+
+  def teardown
+  end
+
+=begin
+=end
+  def test_bbrc
+    dataset = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
+    #dataset = @bbrc.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
+    d =OpenTox::Dataset.new dataset
+    d.load_features
+    assert_equal 41, d.features.size
+    #validate_owl
+  end
+
+  def test_last
+    dataset = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
+    d =OpenTox::Dataset.new dataset
+    d.load_features
+    assert_equal 36, d.features.size
+    #validate_owl
+  end
+
+  def test_regression_bbrc
+    @dataset = OpenTox::Dataset.new
+    @dataset.save
+    @dataset.load_csv(File.open("data/EPAFHM.csv").read)
+    @dataset.save
+    @feature = File.join @dataset.uri,"feature/LC50_mmol" 
+    dataset = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
+    d =OpenTox::Dataset.new dataset
+    d.load_features
+    assert_equal 222, d.features.size
+  end
+
+  def test_regression_last
+    @dataset = OpenTox::Dataset.new
+    @dataset.save
+    @dataset.load_csv(File.open("data/EPAFHM.csv").read)
+    @dataset.save
+    @feature = File.join @dataset.uri,"feature/LC50_mmol" 
+    dataset = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
+    d =OpenTox::Dataset.new dataset
+    d.load_features
+    assert_equal 16, d.features.size
+  end
+=begin
+=end
+
+end