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author | Christoph Helma <helma@in-silico.ch> | 2011-05-12 19:19:46 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2011-05-12 19:19:46 +0200 |
commit | 58c449915b607783738ae86f5b5d6ea2b668a0ea (patch) | |
tree | 7c4c7919b43868a85fbe7223b4d050092bc13407 /lazar.rb | |
parent | d2ca1d714686a23e9e27c9f2845de6cc03f12b73 (diff) |
test fixed for linear fragments in regression bbrc
Diffstat (limited to 'lazar.rb')
-rw-r--r-- | lazar.rb | 9 |
1 files changed, 4 insertions, 5 deletions
@@ -26,17 +26,16 @@ class LazarTest < Test::Unit::TestCase model_uri = OpenTox::Algorithm::Lazar.new.run({:dataset_uri => @@regression_training_dataset.uri, :subjectid => @@subjectid}).to_s lazar = OpenTox::Model::Lazar.find model_uri, @@subjectid @models << lazar - assert_equal 1356, lazar.features.size + assert_equal 185, lazar.features.size compound = OpenTox::Compound.from_smiles("c1ccccc1NN") prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid).to_s prediction = OpenTox::LazarPrediction.find(prediction_uri, @@subjectid) @predictions << prediction - assert_equal prediction.value(compound).round_to(4), 0.17.round_to(4) - assert_equal prediction.confidence(compound).round_to(4), 0.5697.round_to(4) - assert_equal prediction.neighbors(compound).size, 77 + assert_equal prediction.value(compound).round_to(4), 0.3469.round_to(4) + assert_equal prediction.confidence(compound).round_to(4), 0.3223.round_to(4) + assert_equal prediction.neighbors(compound).size, 73 end - def test_classification_model # create model |