Initial sketch of unit tests, cucumber tests are obsolete

1 files changed, 50 insertions, 0 deletions

diff --git a/parser.rb b/parser.rb
new file mode 100644
index 0000000..97ae525
--- /dev/null
+++ b/parser.rb
@@ -0,0 +1,50 @@
+require 'rubygems'
+require 'opentox-ruby-api-wrapper'
+require 'test/unit'
+require 'validate-owl'
+
+class ParserTest < Test::Unit::TestCase
+
+  def setup
+    #@new_dataset = OpenTox::Dataset.from_csv(File.open("data/hamster_carcinogenicity.csv").read)
+    #@new_dataset.add_metadata( OT.hasSource => "data/hamster_carcinogenicity.csv", DC.creator => "opentox-test", DC.title => "Hamster Carcinogenicity" )
+    #@new_dataset.save
+    @datasets = {
+      #@new_dataset.uri => {
+      "http://localhost/dataset/1" => {
+        :nr_compounds => 85,
+        :nr_features => 1,
+        :nr_dataset_features => 1,
+        :nr_data_entries => 85
+      },
+      "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" => {
+        :nr_compounds => 3,
+        :nr_features => 8,
+        :nr_dataset_features => 37,
+        :nr_data_entries => 3
+      }
+    }
+  end
+
+  def teardown
+    #@new_dataset.delete
+  end
+
+  def test_dataset
+    @datasets.each do |uri,properties|
+      parser = OpenTox::Parser::Owl::Dataset.new uri
+      @dataset = parser.load_uri
+      validate properties
+    end
+  end
+  def validate(data)
+    #puts @dataset.yaml
+    assert_kind_of OpenTox::Dataset, @dataset
+    assert_equal @dataset.data_entries.size, data[:nr_data_entries]
+    assert_equal @dataset.compounds.size, data[:nr_compounds]
+    assert_equal @dataset.features.size, data[:nr_dataset_features]
+    # fails for ambit datasets
+    #assert_equal @dataset.uri, @dataset.metadata[XSD.anyURI]
+  end
+
+end