1 files changed, 0 insertions, 60 deletions
diff --git a/5x_cv/CV_ds_pctype_prop_algo_rseed.rb b/5x_cv/CV_ds_pctype_prop_algo_rseed.rb
deleted file mode 100644
index b9c55dd..0000000
--- a/5x_cv/CV_ds_pctype_prop_algo_rseed.rb
+++ /dev/null
@@ -1,60 +0,0 @@
-# Do a 10-fold crossvalidation
-# # Author: Andreas Maunz, David Vorgrimmler
-# # @params: Dataset_name(see dataset_nestle.yaml), pc_type(electronic,cpsa or constitutional ...), prop(true or false), prediction_algorithm(local_mlr_prop or local_svm_regression ...)
-
-if ARGV.size != 5 
-  puts "Args: ds_name, pc_type, prop, algo, random_seed"
-  puts ARGV.size
-  exit
-end
-
-ds_file = "datasets_nestle.yaml"
-pwd=`pwd`
-path = "#{pwd.chop}/#{ds_file}"
-if File.exists?(path)
-  puts "#{ds_file} exists"
-else
-  puts "#{ds_file} does not exist."
-  exit
-end
-
-require 'rubygems'
-require 'opentox-ruby'
-require 'yaml'
-
-subjectid = nil
-
-ds_name = ARGV[0] # e.g. MOU
-pc_type = ARGV[1] # e.g. electronic,cpsa
-prop = ARGV[2]    # true or false
-algo = ARGV[3]    # e.g. local_svm_regression, local_mlr_prop
-r_seed = ARGV[4]  # 1, 2, ..., 10
-
-ds = YAML::load_file("datasets_nestle.yaml")
-ds_uri = ds[ds_name]["dataset"]
-pc_ds_uri = ds[ds_name][pc_type]
-
-algo_params = "pc_type=#{pc_type}";
-algo_params += ";feature_dataset_uri=#{pc_ds_uri}"
-algo_params += ";propositionalized=#{prop}"
-algo_params += ";prediction_algorithm=#{algo}"
-puts algo_params.to_yaml
-
-prediction_feature = OpenTox::Dataset.find(ds_uri).features.keys.first
-
-
-# Ready
-cv_args = {}
-cv_args[:dataset_uri] = ds_uri
-cv_args[:prediction_feature] = prediction_feature
-cv_args[:algorithm_uri] = "http://toxcreate3.in-silico.ch:8087/algorithm/lazar"
-cv_args[:algorithm_params] = algo_params
-cv_args[:stratified] = false
-cv_args[:random_seed] = r_seed
-puts cv_args.to_yaml
-
-cv = OpenTox::Crossvalidation.create(cv_args).uri
-puts cv
-
-cvr = OpenTox::CrossvalidationReport.create( cv , subjectid).uri
-puts cvr