diff options
| -rw-r--r-- | bbrc-sample/bbrc_sample.rb | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/bbrc-sample/bbrc_sample.rb b/bbrc-sample/bbrc_sample.rb index 98c02ef..66b97c0 100644 --- a/bbrc-sample/bbrc_sample.rb +++ b/bbrc-sample/bbrc_sample.rb @@ -16,7 +16,7 @@ path = ARGV[0] ds_file = path.split("/").last if File.exists?(path) - puts "[#{Time.now.utc.iso8601(4).to_s}] #{ds_file} exists." + puts "[#{Time.now.iso8601(4).to_s}] #{ds_file} exists." else puts "#{ds_file} does not exist." exit @@ -25,7 +25,7 @@ end subjectid = nil ds_name = ARGV[1] # e.g. MOU -num_boots = ARGV[2] # e.g. electronic,cpsa or nil to disable +num_boots = ARGV[2] ds = YAML::load_file("#{path}") ds_uri = ds[ds_name]["dataset"] @@ -34,7 +34,7 @@ algo_params = {} algo_params["dataset_uri"] = ds_uri algo_params["num_boots"] = num_boots -puts "[#{Time.now.utc.iso8601(4).to_s}] #{algo_params.to_yaml}" +puts "[#{Time.now.iso8601(4).to_s}] #{algo_params.to_yaml}" ds = OpenTox::Dataset.find(ds_uri) ds_nr_de = ds.data_entries.size @@ -57,12 +57,12 @@ n_stripped_cst = ds_result.metadata[OT::parameters][8][OT::paramValue] random_seed = ds_result.metadata[OT::parameters][9][OT::paramValue] puts -puts "[#{Time.now.utc.iso8601(4).to_s}] Bbrc result: #{result_uri}" -puts "[#{Time.now.utc.iso8601(4).to_s}] nr dataentries: #{ds_result_nr_de} , (of #{ds_nr_de} )" -puts "[#{Time.now.utc.iso8601(4).to_s}] nr dataentries: #{ds_result_nr_com} , (of #{ds_nr_com} )" -puts "[#{Time.now.utc.iso8601(4).to_s}] nr features: #{ds_result_nr_f}" -puts "[#{Time.now.utc.iso8601(4).to_s}] Merge time: #{merge_time}" -puts "[#{Time.now.utc.iso8601(4).to_s}] Duration: #{duration}" +puts "[#{Time.now.iso8601(4).to_s}] Bbrc result: #{result_uri}" +puts "[#{Time.now.iso8601(4).to_s}] nr dataentries: #{ds_result_nr_de} , (of #{ds_nr_de} )" +puts "[#{Time.now.iso8601(4).to_s}] nr dataentries: #{ds_result_nr_com} , (of #{ds_nr_com} )" +puts "[#{Time.now.iso8601(4).to_s}] nr features: #{ds_result_nr_f}" +puts "[#{Time.now.iso8601(4).to_s}] Merge time: #{merge_time}" +puts "[#{Time.now.iso8601(4).to_s}] Duration: #{duration}" puts "=hyperlink(\"#{ds_uri}\";\"#{ds_name}\"),#{num_boots},#{min_sampling_support},#{min_frequency_per_sample},#{nr_hits},=hyperlink(\"#{result_uri}\";\"bbrc_result\"),#{ds_result_nr_com},#{ds_nr_com},#{ds_result_nr_f},#{duration},#{merge_time},#{n_stripped_mss},#{n_stripped_cst},#{random_seed}" |