diff options
| -rw-r--r-- | 5x_cv/5x_crossvalidation.rb | 6 | ||||
| -rw-r--r-- | 5x_cv/dataset_config | 2 | ||||
| -rw-r--r-- | 5x_cv/factors_config | 6 |
3 files changed, 8 insertions, 6 deletions
diff --git a/5x_cv/5x_crossvalidation.rb b/5x_cv/5x_crossvalidation.rb index 9473df2..9df9c53 100644 --- a/5x_cv/5x_crossvalidation.rb +++ b/5x_cv/5x_crossvalidation.rb @@ -48,8 +48,8 @@ if ! exception_config[params[0]].nil? } end -#i=1 -for i in 1..5 +i=1 +#for i in 1..5 begin puts puts "Round #{i.to_s}." @@ -58,7 +58,7 @@ for i in 1..5 rescue Exception => e puts "Error in 5xCV: #{e.message}: #{e.backtrace}" end -end +#end puts puts "--- Validation of dataset (#{params[0]}) finished." puts diff --git a/5x_cv/dataset_config b/5x_cv/dataset_config index 9bc011e..ebf9b9a 100644 --- a/5x_cv/dataset_config +++ b/5x_cv/dataset_config @@ -1,5 +1,5 @@ #FDA v3b Maximum Recommended Daily Dose mmol -http://toxcreate3.in-silico.ch:8080/dataset/2366 +#http://toxcreate3.in-silico.ch:8080/dataset/2366 #EPA v4b Fathead Minnow Acute Toxicity LC50_mmol #http://toxcreate3.in-silico.ch:8080/dataset/2133 #CPDBAS_v5d_20Nov2008_rat_TD50 diff --git a/5x_cv/factors_config b/5x_cv/factors_config index d4ac1b3..42cbad5 100644 --- a/5x_cv/factors_config +++ b/5x_cv/factors_config @@ -1,2 +1,4 @@ -feature_generation_uri=http://toxcreate3.in-silico.ch:8083/algorithm/fminer/bbrc -#feature_generation_uri=http://toxcreate3.in-silico.ch:8082/algorithm/fminer/bbrc;prediction_algorithm=local_mlr_prop;pc_type=electronic;max_perc_neighbors=20 +feature_generation_uri=http://toxcreate3.in-silico.ch:808X/algorithm/fminer/bbrc;prediction_algorithm=local_mlr_prop;pc_type=electronic +feature_generation_uri=http://toxcreate3.in-silico.ch:808X/algorithm/fminer/bbrc;prediction_algorithm=local_mlr_prop;pc_type=constitutional +#feature_generation_uri=http://toxcreate3.in-silico.ch:808X/algorithm/fminer/bbrc;prediction_algorithm=local_svm_regression;local_svm_kernel=propositionalized;pc_type=electronic +#feature_generation_uri=http://toxcreate3.in-silico.ch:808X/algorithm/fminer/bbrc;prediction_algorithm=local_svm_regression;local_svm_kernel=propositionalized;pc_type=constitutional |