diff options
-rw-r--r-- | dataset.rb | 7 | ||||
-rw-r--r-- | lazar.rb | 6 |
2 files changed, 3 insertions, 10 deletions
@@ -29,13 +29,6 @@ class DatasetTest < Test::Unit::TestCase #@new_dataset.delete end -# def test_get_pc -# ds_uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/EPAFHM.csv")} ,{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp -# puts "DS: #{ds_uri}" -# fds_uri = OpenTox::Algorithm.pc_descriptors( { :dataset_uri => ds_uri, :pc_type => "constitutional" } ) -# puts "FDS: #{fds_uri}" -# end - def test_save_external @dataset = OpenTox::Dataset.find "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" @@ -65,9 +65,9 @@ class LazarTest < Test::Unit::TestCase def test_create_regression_svm_pc_model create_model :dataset_uri => @@regression_training_dataset.uri, :feature_dataset_uri => @@regression_feature_dataset.uri, :pc_type => "constitutional" predict_compound OpenTox::Compound.from_smiles("c1ccccc1NN") - assert_in_delta @predictions.first.value(@compounds.first), 7.8, 0.1 - assert_equal 0.603, @predictions.first.confidence(@compounds.first).round_to(3) - assert_equal 74, @predictions.first.neighbors(@compounds.first).size + assert_in_delta @predictions.first.value(@compounds.first), 12.81, 0.1 + assert_equal 0.531, @predictions.first.confidence(@compounds.first).round_to(3) + assert_equal 91, @predictions.first.neighbors(@compounds.first).size cleanup end |