diff options
Diffstat (limited to 'cv/scripts/CV_ds_pctype_algo_rseed.rb')
| -rw-r--r-- | cv/scripts/CV_ds_pctype_algo_rseed.rb | 14 |
1 files changed, 9 insertions, 5 deletions
diff --git a/cv/scripts/CV_ds_pctype_algo_rseed.rb b/cv/scripts/CV_ds_pctype_algo_rseed.rb index 36adb6f..bd86579 100644 --- a/cv/scripts/CV_ds_pctype_algo_rseed.rb +++ b/cv/scripts/CV_ds_pctype_algo_rseed.rb @@ -36,6 +36,10 @@ pc_ds_uri = ds[ds_name][pc_type] algo_params = "prediction_algorithm=#{algo}" algo_params += ";pc_type=#{pc_type}" unless pc_type == "nil" algo_params += ";feature_dataset_uri=#{pc_ds_uri}" unless pc_type == "nil" +#algo_params += ";min_chisq_significance=0.9" +#algo_params += ";min_frequency=6" +#algo_params += ";feature_type=trees" + puts algo_params.to_yaml prediction_feature = OpenTox::Dataset.find(ds_uri).features.keys.first @@ -45,14 +49,14 @@ prediction_feature = OpenTox::Dataset.find(ds_uri).features.keys.first cv_args = {} cv_args[:dataset_uri] = ds_uri cv_args[:prediction_feature] = prediction_feature -cv_args[:algorithm_uri] = "http://toxcreate3.in-silico.ch:80XX/algorithm/lazar" +cv_args[:algorithm_uri] = "http://toxcreate3.in-silico.ch:8080/algorithm/lazar" cv_args[:algorithm_params] = algo_params cv_args[:stratified] = false cv_args[:random_seed] = r_seed puts cv_args.to_yaml -#cv = OpenTox::Crossvalidation.create(cv_args).uri -#puts cv +cv = OpenTox::Crossvalidation.create(cv_args).uri +puts cv -#cvr = OpenTox::CrossvalidationReport.create( cv , subjectid).uri -#puts cvr +cvr = OpenTox::CrossvalidationReport.create( cv , subjectid).uri +puts cvr |