diff options
Diffstat (limited to 'dataset.rb')
| -rw-r--r-- | dataset.rb | 56 |
1 files changed, 17 insertions, 39 deletions
@@ -219,45 +219,23 @@ class DatasetTest < Test::Unit::TestCase end end - - def test_merge() - #upload - dataset1 = OpenTox::Dataset.create_from_csv_file(File.new("data/hamster_carcinogenicity.csv").path, @@subjectid) - dataset2 = OpenTox::Dataset.create_from_csv_file(File.new("data/multi_cell_call.csv").path, @@subjectid) - #merge1 - title = "test merge" - dataset_merge1 = OpenTox::Dataset.merge(dataset1, dataset2, { DC.title => title,DC.creator => "testsuite"}, @@subjectid ) - dataset_reloaded1 = OpenTox::Dataset.find(dataset_merge1.uri, @@subjectid) - #test1 - [dataset_merge1, dataset_reloaded1].each do |d| - assert_equal d.metadata[DC.title],title - assert_equal d.features.size,(dataset1.features.size+dataset2.features.size) - assert_equal d.compounds.size,(dataset1.compounds+dataset2.compounds).uniq.size - [dataset1, dataset2].each do |d_i| - d_i.compounds.each{|c| assert d.compounds.include?(c)} - d_i.features.keys.each{|f| assert d.features.keys.include?(f)} - d_i.features.keys.each do |f| - assert_equal d_i.features[f],d.features[f] - d_i.compounds do |c| - assert_equal d_i.data_entries[c][f],d.data_entries[c][f] - end - end - end - end - #merge2 - compounds1 = dataset1.compounds[0..dataset1.compounds.size/2] - features1 = [] - dataset_merge2 = OpenTox::Dataset.merge(dataset1, dataset2, {}, @@subjectid, features1, nil, compounds1 ) - dataset_reloaded2 = OpenTox::Dataset.find(dataset_merge2.uri, @@subjectid) - #test2 - [dataset_merge2, dataset_reloaded2].each do |d| - assert_equal d.features.size,dataset2.features.size - assert_equal d.compounds.size,(compounds1+dataset2.compounds).uniq.size - end - #cleanup - [dataset_merge1, dataset_merge2, dataset1, dataset2].each do |d| - OpenTox::RestClientWrapper.delete(d.uri,{:subjectid => @@subjectid}) - end + def test_split() + puts "test_split" + d = @@duplicate_dataset + assert_equal(d.compounds.size,11) + assert_equal(d.compounds.uniq.size,10) + assert_equal(d.compounds[9],d.compounds[10]) + dupl = d.compounds[9] + feat1 = d.features.keys.sort[0] + feat2 = d.features.keys.sort[1] + assert_not_equal(d.data_entries[dupl][feat1][0],d.data_entries[dupl][feat1][1]) + assert_equal(d.data_entries[dupl][feat2][0],nil) + d2 = d.split([0,1,2,3,4,5,6,7,8,10],d.features.keys,d.metadata) + assert_equal(d2.compounds.size,10) + assert_equal(d2.compounds.uniq.size,10) + assert_equal(d.data_entries[dupl][feat1][1],d2.data_entries[dupl][feat1][0]) + assert_equal(d2.data_entries[dupl][feat2][0],"a") + d2.delete end def test_multithreading |