diff options
Diffstat (limited to 'dataset.rb')
| -rw-r--r-- | dataset.rb | 16 |
1 files changed, 10 insertions, 6 deletions
@@ -68,12 +68,6 @@ class DatasetTest < Test::Unit::TestCase def test_sdf_with_multiple_features uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], File.read("data/CPDBAS_v5c_1547_29Apr2008part.sdf") ,{:accept => "text/uri-list",:content_type => "chemical/x-mdl-sdfile", :subjectid => @@subjectid}).to_s.chomp assert_kind_of URI::HTTP, URI.parse(uri) - #puts uri - #uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], File.read("/dataCPDBAS_v5c_1547_29Apr2008.sdf") ,{:accept => "text/uri-list",:content_type => "chemical/x-mdl-sdfile", :subjectid => @@subjectid}).to_s.chomp - #@dataset = OpenTox::Dataset.find uri, @@subjectid - ##@dataset = OpenTox::Dataset.new uri - #@dataset.load_all @@subjectid - #hamster_carc? end def test_rest_csv @@ -149,6 +143,16 @@ class DatasetTest < Test::Unit::TestCase end end + def test_sdf + @datasets.each do |uri,data| + @dataset = OpenTox::Dataset.new(uri) + @dataset.load_all @@subjectid + sdf = @dataset.to_sdf + size = sdf.lines.to_a.select{|i| i == "$$$$\n"}.size + assert_equal size, data[:nr_compounds] if data + end + end + def test_csv @datasets.each do |uri,data| @dataset = OpenTox::Dataset.new(uri) |