diff options
Diffstat (limited to 'dataset.rb')
-rw-r--r-- | dataset.rb | 52 |
1 files changed, 26 insertions, 26 deletions
@@ -29,7 +29,7 @@ class DatasetTest < Test::Unit::TestCase =begin def test_save_external - @dataset = OpenTox::Dataset.find "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" + @dataset = OpenTox::Dataset.find "http://apps.ideaconsult.net:8080/ambit2/dataset/2698", @@subjectid #File.open("test.rdf","w+"){|f| f.puts @dataset.to_rdfxml} @dataset.uri = "http://apps.ideaconsult.net:8080/ambit2/dataset" uri = @dataset.save(@@subjectid) @@ -47,7 +47,7 @@ class DatasetTest < Test::Unit::TestCase end def test_all - datasets = OpenTox::Dataset.all + datasets = OpenTox::Dataset.all(CONFIG[:services]["opentox-dataset"], @@subjectid) assert_kind_of Array, datasets end @@ -59,36 +59,36 @@ class DatasetTest < Test::Unit::TestCase end def test_from_yaml - @dataset = OpenTox::Dataset.new + @dataset = OpenTox::Dataset.new nil, @@subjectid @dataset.load_yaml(File.open("data/hamster_carcinogenicity.yaml").read) hamster_carc? end def test_rest_csv uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:accept => "text/uri-list"}, {:file => File.new("data/hamster_carcinogenicity.csv"), :subjectid => @@subjectid}).to_s.chomp - @dataset = OpenTox::Dataset.new uri - @dataset.load_all + @dataset = OpenTox::Dataset.new uri, @@subjectid + @dataset.load_all(@@subjectid) hamster_carc? end def test_multicolumn_csv uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:accept => "text/uri-list"}, {:file => File.new("data/multicolumn.csv"), :subjectid => @@subjectid}).to_s.chomp - @dataset = OpenTox::Dataset.new uri - @dataset.load_all + @dataset = OpenTox::Dataset.new uri, @@subjectid + @dataset.load_all(@@subjectid) assert_equal 5, @dataset.features.size assert_equal 4, @dataset.compounds.size end def test_from_csv - @dataset = OpenTox::Dataset.new + @dataset = OpenTox::Dataset.new(nil, @@subjectid) @dataset.load_csv(File.open("data/hamster_carcinogenicity.csv").read, @@subjectid) hamster_carc? @dataset.delete(@@subjectid) end def test_from_excel - @dataset = OpenTox::Dataset.new + @dataset = OpenTox::Dataset.new(nil, @@subjectid) @dataset.load_spreadsheet(Excel.new("data/hamster_carcinogenicity.xls"), @@subjectid) hamster_carc? @dataset.delete(@@subjectid) @@ -96,39 +96,39 @@ class DatasetTest < Test::Unit::TestCase def test_load_metadata @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.find(uri) + @dataset = OpenTox::Dataset.find(uri, @@subjectid) assert @dataset.metadata.size != 0 end end def test_load_compounds @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_compounds + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_compounds(@@subjectid) assert_equal @dataset.compounds.size,data[:nr_compounds] end end def test_load_features @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_features + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_features(@@subjectid) assert_equal @dataset.features.keys.size,data[:nr_dataset_features] end end def test_load_all @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) validate data end end def test_yaml @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) #@dataset = YAML.load @dataset.to_yaml validate data end @@ -136,8 +136,8 @@ class DatasetTest < Test::Unit::TestCase def test_csv @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) csv = @dataset.to_csv.split("\n") assert_equal csv.size, data[:nr_compounds]+1 assert_equal csv.first.split(", ").size, data[:nr_dataset_features]+1 @@ -146,8 +146,8 @@ class DatasetTest < Test::Unit::TestCase def test_excel @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) book = @dataset.to_spreadsheet assert_kind_of Spreadsheet::Workbook, book #File.open("#{@dataset.id}.xls","w+"){|f| book.write f.path} @@ -156,16 +156,16 @@ class DatasetTest < Test::Unit::TestCase def test_ntriples @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) assert_kind_of String, @dataset.to_ntriples end end def test_owl @datasets.each do |uri,data| - @dataset = OpenTox::Dataset.new(uri) - @dataset.load_all + @dataset = OpenTox::Dataset.new(uri, @@subjectid) + @dataset.load_all(@@subjectid) assert_kind_of String, @dataset.to_rdfxml end end |