diff options
Diffstat (limited to 'dataset.rb')
| -rw-r--r-- | dataset.rb | 18 |
1 files changed, 9 insertions, 9 deletions
@@ -28,23 +28,22 @@ class DatasetTest < Test::Unit::TestCase end =begin +=end def test_save_external @dataset = OpenTox::Dataset.find "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" #File.open("test.rdf","w+"){|f| f.puts @dataset.to_rdfxml} @dataset.uri = "http://apps.ideaconsult.net:8080/ambit2/dataset" uri = @dataset.save(@@subjectid) - puts uri #@dataset.load_csv(File.open("data/hamster_carcinogenicity.csv").read) #@dataset.save end -=end def test_create dataset = OpenTox::Dataset.create(CONFIG[:services]["opentox-dataset"], @@subjectid) dataset.save(@@subjectid) assert_kind_of URI::HTTP, URI.parse(dataset.uri) - dataset.delete(@@subjectid) + #dataset.delete(@@subjectid) end def test_all @@ -66,15 +65,17 @@ class DatasetTest < Test::Unit::TestCase end def test_rest_csv - uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:file => File.new("data/hamster_carcinogenicity.csv"), :subjectid => @@subjectid}, {:accept => "text/uri-list"}).to_s.chomp - @dataset = OpenTox::Dataset.new uri + uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/hamster_carcinogenicity.csv")} ,{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp + @dataset = OpenTox::Dataset.new uri, @@subjectid + #@dataset = OpenTox::Dataset.new uri @dataset.load_all @@subjectid hamster_carc? end def test_multicolumn_csv - uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:file => File.new("data/multicolumn.csv"), :subjectid => @@subjectid}, {:accept => "text/uri-list"}).to_s.chomp - @dataset = OpenTox::Dataset.new uri + uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"], {:file => File.new("data/multicolumn.csv")},{:accept => "text/uri-list", :subjectid => @@subjectid}).to_s.chomp + @dataset = OpenTox::Dataset.new uri, @@subjectid + #@dataset = OpenTox::Dataset.new uri @dataset.load_all @@subjectid assert_equal 5, @dataset.features.size assert_equal 4, @dataset.compounds.size @@ -84,6 +85,7 @@ class DatasetTest < Test::Unit::TestCase def test_from_csv @dataset = OpenTox::Dataset.new @dataset.load_csv(File.open("data/hamster_carcinogenicity.csv").read, @@subjectid) + #puts @dataset.to_yaml hamster_carc? @dataset.delete(@@subjectid) end @@ -171,8 +173,6 @@ class DatasetTest < Test::Unit::TestCase end end -#=end - def test_rdf_conversion @datasets.each do |uri,data| #puts "dataset "+uri.to_s |