diff options
Diffstat (limited to 'lazar.rb')
| -rw-r--r-- | lazar.rb | 31 |
1 files changed, 4 insertions, 27 deletions
@@ -54,9 +54,9 @@ class LazarTest < Test::Unit::TestCase FileUtils.cp f, reference FileUtils.rm f end - @predictions.each do |dataset| - dataset.delete(@@subjectid) - end + #@predictions.each do |dataset| + # dataset.delete(@@subjectid) + #end @model.delete(@@subjectid) end @@ -71,18 +71,8 @@ def test_create_regression_svm_pc_model cleanup end -def test_create_regression_svm_model - create_model :dataset_uri => @@regression_training_dataset.uri, :min_train_performance => 0.0001 - predict_compound OpenTox::Compound.from_smiles("c1ccccc1NN") - assert_in_delta @predictions.first.value(@compounds.first), 0.6, 0.5 - assert_equal 0.61, @predictions.first.confidence(@compounds.first).round_to(2) - assert_equal 253, @predictions.first.neighbors(@compounds.first).size - assert_equal 131, @model.features.size - cleanup -end - -#Classification +##Classification def test_classification_model create_model :dataset_uri => @@classification_training_dataset.uri # single prediction @@ -112,19 +102,6 @@ def test_classification_model cleanup end -def test_classification_svm_model - create_model :dataset_uri => @@classification_training_dataset.uri, :prediction_algorithm => "local_svm_classification" - predict_compound OpenTox::Compound.from_smiles("c1ccccc1NN") - predict_dataset OpenTox::Dataset.create_from_csv_file("data/multicolumn.csv", @@subjectid) - - assert_equal "false", @predictions[0].value(@compounds[0]) - assert_equal 0.5358, @predictions[0].confidence(@compounds[0]).round_to(4) - assert_equal 22, @predictions[0].neighbors(@compounds[0]).size - assert_equal 41, @model.features.size - cleanup -end - - # DISABLED TEMPORARILY # def test_ambit_classification_model # |