From 9400b9abba43cc3a9d2a21d1ab174534de9f9128 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Thu, 16 Dec 2010 17:30:08 +0100
Subject: lazar results rounded to 4 decimal points

---
 Rakefile     |  1 +
 algorithm.rb | 16 ----------------
 fminer.rb    |  2 +-
 lazar.rb     | 12 +++++++++---
 4 files changed, 11 insertions(+), 20 deletions(-)

diff --git a/Rakefile b/Rakefile
index 01050c8..a287f95 100644
--- a/Rakefile
+++ b/Rakefile
@@ -5,6 +5,7 @@ TEST_USER = "guest"
 TEST_PW   = "guest"
 
 task ARGV[0] do
+  puts ENV["RACK_ENV"]
   puts ARGV[0]+".rb"
   require "./"+ARGV[0]+".rb"
 end
diff --git a/algorithm.rb b/algorithm.rb
index a5f35d1..055f0a2 100644
--- a/algorithm.rb
+++ b/algorithm.rb
@@ -24,21 +24,5 @@ class AlgorithmTest < Test::Unit::TestCase
     end
   end
 
-=begin
-  def test_run_external
-    {
-      #"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/10", :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/21595"},
-      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/toxtreeskinirritation" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }, # TASK redirects to model
-      "http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/CDKPhysChem" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
-      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/org.openscience.cdk.qsar.descriptors.molecular.ALOGPDescriptor" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }
-      #"http://opentox.ntua.gr:3000/algorithm/svm"
-    }.each do |uri,params|
-      algorithm = OpenTox::Algorithm::Generic.new uri
-      dataset_uri = algorithm.run(params)
-      dataset = OpenTox::Dataset.find dataset_uri
-      puts dataset.to_yaml
-    end
-  end
-=end
 
 end
diff --git a/fminer.rb b/fminer.rb
index c52f78c..a8552d7 100644
--- a/fminer.rb
+++ b/fminer.rb
@@ -22,7 +22,7 @@ class FminerTest < Test::Unit::TestCase
     dataset_uri = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @@classification_training_dataset.uri, :prediction_feature => feature, :subjectid => @@subjectid}).to_s
     d =OpenTox::Dataset.new dataset_uri
     d.load_features
-    assert_equal 35, d.features.size
+    assert_equal 36, d.features.size
     #validate_owl
     d.delete(@@subjectid)
   end
diff --git a/lazar.rb b/lazar.rb
index 6324f3c..0ee7a43 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -2,6 +2,12 @@ require 'rubygems'
 require 'opentox-ruby'
 require 'test/unit'
 
+class Float
+  def round_to(x)
+    (self * 10**x).round.to_f / 10**x
+  end
+end
+
 class LazarTest < Test::Unit::TestCase
 
 =begin
@@ -13,8 +19,8 @@ class LazarTest < Test::Unit::TestCase
     compound = OpenTox::Compound.from_smiles("c1ccccc1NN")
     prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
     prediction = OpenTox::LazarPrediction.find(prediction_uri)
-    assert_equal prediction.value(compound), 0.149480050002539
-    assert_equal prediction.confidence(compound), 0.615246530364447
+    assert_equal prediction.value(compound).round_to(4), 0.149518871336721.round_to(4)
+    assert_equal prediction.confidence(compound).round_to(4), 0.615246530364447.round_to(4)
     assert_equal prediction.neighbors(compound).size, 81
     prediction.delete(@@subjectid)
     lazar.delete(@@subjectid)
@@ -30,7 +36,7 @@ class LazarTest < Test::Unit::TestCase
     prediction_uri = lazar.run(:compound_uri => compound.uri, :subjectid => @@subjectid)
     prediction = OpenTox::LazarPrediction.find(prediction_uri)
     assert_equal prediction.value(compound), false
-    assert_equal prediction.confidence(compound), 0.25857114104619
+    assert_equal prediction.confidence(compound).round_to(4), 0.25857114104619.round_to(4)
     assert_equal prediction.neighbors(compound).size, 15
     prediction.delete(@@subjectid)
     # dataset activity
-- 
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