From f918cb88d5a16cfed94a30cf1fd8e647ed80df3f Mon Sep 17 00:00:00 2001 From: davor Date: Sun, 4 Mar 2012 13:49:01 +0100 Subject: Updated factors_config files for given feature datasets and added result logs. --- cv/scripts/factors_config | 5 +++ cv/scripts/factors_config_FHM | 9 +++-- cv/scripts/factors_config_LOAEL | 9 +++-- cv/scripts/factors_config_LOAEL_loo | 9 +++-- cv/scripts/factors_config_MOU | 9 +++-- cv/scripts/factors_config_RAT | 9 +++-- cv/scripts/logs/FHM.log | 56 +++++++++++++++++++++++++++++ cv/scripts/logs/LOAEL.log | 70 +++++++++++++++++++++++++++++++++++++ cv/scripts/logs/LOAEL_loo.log | 65 ++++++++++++++++++++++++++++++++++ cv/scripts/logs/MOU_ttv.log | 65 ++++++++++++++++++++++++++++++++++ cv/scripts/logs/RAT_ttv.log | 65 ++++++++++++++++++++++++++++++++++ 11 files changed, 361 insertions(+), 10 deletions(-) create mode 100644 cv/scripts/logs/FHM.log create mode 100644 cv/scripts/logs/LOAEL.log create mode 100644 cv/scripts/logs/LOAEL_loo.log create mode 100644 cv/scripts/logs/MOU_ttv.log create mode 100644 cv/scripts/logs/RAT_ttv.log diff --git a/cv/scripts/factors_config b/cv/scripts/factors_config index 9afb221..84cd73d 100644 --- a/cv/scripts/factors_config +++ b/cv/scripts/factors_config @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression #FHM constitutional local_svm_regression #FHM electronic,cpsa local_svm_regression #FHM topological local_svm_regression #FHM hybrid local_svm_regression #FHM joelib local_svm_regression +#FHM all_pc local_svm_regression #FHM nil local_svm_regression #RAT constitutional local_svm_regression #RAT electronic,cpsa local_svm_regression #RAT topological local_svm_regression #RAT hybrid local_svm_regression #RAT joelib local_svm_regression +#RAT all_pc local_svm_regression #RAT nil local_svm_regression #MOU constitutional local_svm_regression #MOU electronic,cpsa local_svm_regression #MOU topological local_svm_regression #MOU hybrid local_svm_regression #MOU joelib local_svm_regression +#MOU all_pc local_svm_regression #MOU nil local_svm_regression #LOAEL constitutional local_svm_regression #LOAEL electronic,cpsa local_svm_regression #LOAEL topological local_svm_regression #LOAEL hybrid local_svm_regression #LOAEL joelib local_svm_regression +#LOAEL all_pc local_svm_regression #LOAEL nil local_svm_regression diff --git a/cv/scripts/factors_config_FHM b/cv/scripts/factors_config_FHM index 5ab8521..ac48751 100644 --- a/cv/scripts/factors_config_FHM +++ b/cv/scripts/factors_config_FHM @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression FHM constitutional local_svm_regression FHM electronic,cpsa local_svm_regression FHM topological local_svm_regression -FHM hybrid local_svm_regression +#FHM hybrid local_svm_regression FHM joelib local_svm_regression -FHM nil local_svm_regression +#FHM all_pc local_svm_regression +#FHM nil local_svm_regression #RAT constitutional local_svm_regression #RAT electronic,cpsa local_svm_regression #RAT topological local_svm_regression #RAT hybrid local_svm_regression #RAT joelib local_svm_regression +#RAT all_pc local_svm_regression #RAT nil local_svm_regression #MOU constitutional local_svm_regression #MOU electronic,cpsa local_svm_regression #MOU topological local_svm_regression #MOU hybrid local_svm_regression #MOU joelib local_svm_regression +#MOU all_pc local_svm_regression #MOU nil local_svm_regression #LOAEL constitutional local_svm_regression #LOAEL electronic,cpsa local_svm_regression #LOAEL topological local_svm_regression #LOAEL hybrid local_svm_regression #LOAEL joelib local_svm_regression +#LOAEL all_pc local_svm_regression #LOAEL nil local_svm_regression diff --git a/cv/scripts/factors_config_LOAEL b/cv/scripts/factors_config_LOAEL index 85abf22..4254011 100644 --- a/cv/scripts/factors_config_LOAEL +++ b/cv/scripts/factors_config_LOAEL @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression #FHM constitutional local_svm_regression #FHM electronic,cpsa local_svm_regression #FHM topological local_svm_regression #FHM hybrid local_svm_regression #FHM joelib local_svm_regression +#FHM all_pc local_svm_regression #FHM nil local_svm_regression #RAT constitutional local_svm_regression #RAT electronic,cpsa local_svm_regression #RAT topological local_svm_regression #RAT hybrid local_svm_regression #RAT joelib local_svm_regression +#RAT all_pc local_svm_regression #RAT nil local_svm_regression #MOU constitutional local_svm_regression #MOU electronic,cpsa local_svm_regression #MOU topological local_svm_regression #MOU hybrid local_svm_regression #MOU joelib local_svm_regression +#MOU all_pc local_svm_regression #MOU nil local_svm_regression LOAEL constitutional local_svm_regression LOAEL electronic,cpsa local_svm_regression LOAEL topological local_svm_regression -LOAEL hybrid local_svm_regression +#LOAEL hybrid local_svm_regression LOAEL joelib local_svm_regression -LOAEL nil local_svm_regression +LOAEL all_pc local_svm_regression +#LOAEL nil local_svm_regression diff --git a/cv/scripts/factors_config_LOAEL_loo b/cv/scripts/factors_config_LOAEL_loo index 85abf22..4254011 100644 --- a/cv/scripts/factors_config_LOAEL_loo +++ b/cv/scripts/factors_config_LOAEL_loo @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression #FHM constitutional local_svm_regression #FHM electronic,cpsa local_svm_regression #FHM topological local_svm_regression #FHM hybrid local_svm_regression #FHM joelib local_svm_regression +#FHM all_pc local_svm_regression #FHM nil local_svm_regression #RAT constitutional local_svm_regression #RAT electronic,cpsa local_svm_regression #RAT topological local_svm_regression #RAT hybrid local_svm_regression #RAT joelib local_svm_regression +#RAT all_pc local_svm_regression #RAT nil local_svm_regression #MOU constitutional local_svm_regression #MOU electronic,cpsa local_svm_regression #MOU topological local_svm_regression #MOU hybrid local_svm_regression #MOU joelib local_svm_regression +#MOU all_pc local_svm_regression #MOU nil local_svm_regression LOAEL constitutional local_svm_regression LOAEL electronic,cpsa local_svm_regression LOAEL topological local_svm_regression -LOAEL hybrid local_svm_regression +#LOAEL hybrid local_svm_regression LOAEL joelib local_svm_regression -LOAEL nil local_svm_regression +LOAEL all_pc local_svm_regression +#LOAEL nil local_svm_regression diff --git a/cv/scripts/factors_config_MOU b/cv/scripts/factors_config_MOU index 60f55b0..cbe50c6 100644 --- a/cv/scripts/factors_config_MOU +++ b/cv/scripts/factors_config_MOU @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression #FHM constitutional local_svm_regression #FHM electronic,cpsa local_svm_regression #FHM topological local_svm_regression #FHM hybrid local_svm_regression #FHM joelib local_svm_regression +#FHM all_pc local_svm_regression #FHM nil local_svm_regression #RAT constitutional local_svm_regression #RAT electronic,cpsa local_svm_regression #RAT topological local_svm_regression #RAT hybrid local_svm_regression #RAT joelib local_svm_regression +#RAT all_pc local_svm_regression #RAT nil local_svm_regression MOU constitutional local_svm_regression MOU electronic,cpsa local_svm_regression MOU topological local_svm_regression -MOU hybrid local_svm_regression +#MOU hybrid local_svm_regression MOU joelib local_svm_regression -MOU nil local_svm_regression +MOU all_pc local_svm_regression +#MOU nil local_svm_regression #LOAEL constitutional local_svm_regression #LOAEL electronic,cpsa local_svm_regression #LOAEL topological local_svm_regression #LOAEL hybrid local_svm_regression #LOAEL joelib local_svm_regression +#LOAEL all_pc local_svm_regression #LOAEL nil local_svm_regression diff --git a/cv/scripts/factors_config_RAT b/cv/scripts/factors_config_RAT index b03812a..eb9a0a3 100644 --- a/cv/scripts/factors_config_RAT +++ b/cv/scripts/factors_config_RAT @@ -4,28 +4,33 @@ #MDD topological local_svm_regression #MDD hybrid local_svm_regression #MDD joelib local_svm_regression +#MDD all_pc local_svm_regression #MDD nil local_svm_regression #FHM constitutional local_svm_regression #FHM electronic,cpsa local_svm_regression #FHM topological local_svm_regression #FHM hybrid local_svm_regression #FHM joelib local_svm_regression +#FHM all_pc local_svm_regression #FHM nil local_svm_regression RAT constitutional local_svm_regression RAT electronic,cpsa local_svm_regression RAT topological local_svm_regression -RAT hybrid local_svm_regression +#RAT hybrid local_svm_regression RAT joelib local_svm_regression -RAT nil local_svm_regression +RAT all_pc local_svm_regression +#RAT nil local_svm_regression #MOU constitutional local_svm_regression #MOU electronic,cpsa local_svm_regression #MOU topological local_svm_regression #MOU hybrid local_svm_regression #MOU joelib local_svm_regression +#MOU all_pc local_svm_regression #MOU nil local_svm_regression #LOAEL constitutional local_svm_regression #LOAEL electronic,cpsa local_svm_regression #LOAEL topological local_svm_regression #LOAEL hybrid local_svm_regression #LOAEL joelib local_svm_regression +#LOAEL all_pc local_svm_regression #LOAEL nil local_svm_regression diff --git a/cv/scripts/logs/FHM.log b/cv/scripts/logs/FHM.log new file mode 100644 index 0000000..0e4ce20 --- /dev/null +++ b/cv/scripts/logs/FHM.log @@ -0,0 +1,56 @@ +20120228_17_: FHM constitutional local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_FHM.rb FHM constitutional local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6453 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6453 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/6 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/6/feature/LOGINV_TD50_mmol +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/22 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/33 + +20120228_17_: FHM electronic,cpsa local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_FHM.rb FHM electronic,cpsa local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6265 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6265 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/6 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/6/feature/LOGINV_TD50_mmol +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/26 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/36 + +20120228_17_: FHM topological local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_FHM.rb FHM topological local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7082 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7082 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/6 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/6/feature/LOGINV_TD50_mmol +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/29 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/37 + +20120228_17_: FHM joelib local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_FHM.rb FHM joelib local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6376 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6376 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/6 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/6/feature/LOGINV_TD50_mmol +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/30 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/38 + diff --git a/cv/scripts/logs/LOAEL.log b/cv/scripts/logs/LOAEL.log new file mode 100644 index 0000000..ad9229e --- /dev/null +++ b/cv/scripts/logs/LOAEL.log @@ -0,0 +1,70 @@ +20120228_17_: LOAEL constitutional local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL.rb LOAEL constitutional local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6974 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6974 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/23 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/32 + +20120228_17_: LOAEL electronic,cpsa local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL.rb LOAEL electronic,cpsa local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6811 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6811 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/25 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/35 + +20120228_17_: LOAEL topological local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL.rb LOAEL topological local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7084 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7084 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/28 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/40 + +20120228_17_: LOAEL joelib local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL.rb LOAEL joelib local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6916 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6916 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/32 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/41 + +20120301_22_: LOAEL all_pc local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL.rb LOAEL all_pc local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11582 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11582 +:stratified: false +:random_seed: "1" +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/34 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/54 + diff --git a/cv/scripts/logs/LOAEL_loo.log b/cv/scripts/logs/LOAEL_loo.log new file mode 100644 index 0000000..655061e --- /dev/null +++ b/cv/scripts/logs/LOAEL_loo.log @@ -0,0 +1,65 @@ +20120228_17_: LOAEL constitutional local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL constitutional local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6974 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6974 +:loo: true +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/24 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/34 + +20120228_17_: LOAEL electronic,cpsa local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL electronic,cpsa local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6811 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6811 +:loo: true +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/27 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/39 + +20120228_17_: LOAEL topological local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL topological local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7084 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7084 +:loo: true +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/31 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/42 + +20120228_17_: LOAEL joelib local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL joelib local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6916 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6916 +:loo: true +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/33 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/43 + +20120301_22_: LOAEL all_pc local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_LOAEL_loo.rb LOAEL all_pc local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11582 +--- +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11582 +:loo: true +:dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/9 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/9/feature/LOAEL_mol/kg_bw/day +http://toxcreate3.in-silico.ch:8080/validation/crossvalidation/35 +http://toxcreate3.in-silico.ch:8080/validation/report/crossvalidation/55 + diff --git a/cv/scripts/logs/MOU_ttv.log b/cv/scripts/logs/MOU_ttv.log new file mode 100644 index 0000000..ab16297 --- /dev/null +++ b/cv/scripts/logs/MOU_ttv.log @@ -0,0 +1,65 @@ +20120228_22_: MOU constitutional local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_MOU_ttv.rb MOU constitutional local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7052 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/11 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/10/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/10 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7052 +http://toxcreate3.in-silico.ch:8080/validation/5140 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/44 + +20120228_22_: MOU electronic,cpsa local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_MOU_ttv.rb MOU electronic,cpsa local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7048 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/11 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/10/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/10 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7048 +http://toxcreate3.in-silico.ch:8080/validation/5142 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/46 + +20120228_22_: MOU topological local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_MOU_ttv.rb MOU topological local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7085 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/11 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/10/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/10 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7085 +http://toxcreate3.in-silico.ch:8080/validation/5144 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/48 + +20120228_22_: MOU joelib local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_MOU_ttv.rb MOU joelib local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7050 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/11 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/10/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/10 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7050 +http://toxcreate3.in-silico.ch:8080/validation/5146 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/49 + +20120302_15_: MOU all_pc local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_MOU_ttv.rb MOU all_pc local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/12944 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/11 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/10/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/10 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/12944 +http://toxcreate3.in-silico.ch:8080/validation/5602 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/57 + diff --git a/cv/scripts/logs/RAT_ttv.log b/cv/scripts/logs/RAT_ttv.log new file mode 100644 index 0000000..30175de --- /dev/null +++ b/cv/scripts/logs/RAT_ttv.log @@ -0,0 +1,65 @@ +20120228_22_: RAT constitutional local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_RAT_ttv.rb RAT constitutional local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6714 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/13 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/12/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/12 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=constitutional;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6714 +http://toxcreate3.in-silico.ch:8080/validation/5141 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/45 + +20120228_22_: RAT electronic,cpsa local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_RAT_ttv.rb RAT electronic,cpsa local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6571 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/13 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/12/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/12 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=electronic,cpsa;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6571 +http://toxcreate3.in-silico.ch:8080/validation/5143 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/47 + +20120228_22_: RAT topological local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_RAT_ttv.rb RAT topological local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7083 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/13 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/12/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/12 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=topological;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/7083 +http://toxcreate3.in-silico.ch:8080/validation/5145 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/50 + +20120228_22_: RAT joelib local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_RAT_ttv.rb RAT joelib local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6656 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/13 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/12/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/12 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=joelib;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/6656 +http://toxcreate3.in-silico.ch:8080/validation/5147 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/51 + +20120301_21_: RAT all_pc local_svm_regression 1 +ruby CV_ds_pctype_algo_rseed_RAT_ttv.rb RAT all_pc local_svm_regression 1 +datasets.yaml exists +--- prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11580 +--- +:test_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/13 +:prediction_feature: http://toxcreate3.in-silico.ch:8080/dataset/12/feature/pTD50 +:training_dataset_uri: http://toxcreate3.in-silico.ch:8080/dataset/12 +:algorithm_uri: http://toxcreate3.in-silico.ch:8080/algorithm/lazar +:algorithm_params: prediction_algorithm=local_svm_regression;pc_type=all_pc;feature_dataset_uri=http://toxcreate3.in-silico.ch:8080/dataset/11580 +http://toxcreate3.in-silico.ch:8080/validation/5148 +http://toxcreate3.in-silico.ch:8080/validation/report/validation/53 + -- cgit v1.2.3