From 03a173c9a19b5345080f90d724687761cdeb0fcd Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Thu, 10 Mar 2011 11:03:01 +0100
Subject: initial toxcreate tests added

---
 external.rb | 84 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 84 insertions(+)
 create mode 100644 external.rb

(limited to 'external.rb')

diff --git a/external.rb b/external.rb
new file mode 100644
index 0000000..fb965be
--- /dev/null
+++ b/external.rb
@@ -0,0 +1,84 @@
+require 'rubygems'
+require 'opentox-ruby'
+require 'test/unit'
+require "./validate-owl.rb"
+
+class Float
+  def round_to(x)
+    (self * 10**x).round.to_f / 10**x
+  end
+end
+
+class ExternalAlgorithmTest < Test::Unit::TestCase
+
+
+      # fix dataset
+      #"http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/10", :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/21595"},
+      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/toxtreeskinirritation" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }, # TASK redirects to model
+      #"http://apps.ideaconsult.net:8080/ambit2/algorithm/org.openscience.cdk.qsar.descriptors.molecular.ALOGPDescriptor" => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" }
+      #""
+  def test_model_creation
+    {
+      # works
+=begin
+      "http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/J48" => {
+        :params => {
+          :dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/19629",
+          :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/111148"
+        },
+        :feature_value => []
+      },
+=end
+      "http://opentox.ntua.gr:3000/algorithm/svm" => {
+        :params => {
+          :dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/54",
+          :prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/22201"
+          #:prediction_feature => "http://apps.ideaconsult.net:8080/ambit2/feature/28364"
+        },
+        :feature_value => []
+      }
+    }.each do |uri,data|
+      algorithm = OpenTox::Algorithm::Generic.new uri
+      model_uri = algorithm.run(data[:params])
+      #puts model_uri
+      assert_match /model/, model_uri
+    end
+  end
+
+=begin
+  def test_descriptor_services
+    {
+      # works
+      "http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/CDKPhysChem" => {
+        :params => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
+        :feature_value => [
+          "http://apps.ideaconsult.net:8080/ambit2/compound/143948/conformer/420420",
+          "http://apps.ideaconsult.net:8080/ambit2/feature/26184",
+          0.5509999990463257
+        ]
+      },
+      "http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/JOELIB2" => {
+        :params => {:dataset_uri => "http://apps.ideaconsult.net:8080/ambit2/dataset/2698" },
+        :feature_value => [
+          "http://apps.ideaconsult.net:8080/ambit2/compound/143948/conformer/420420",
+          "http://apps.ideaconsult.net:8080/ambit2/feature/26556",
+          4.16669988632202
+        ]
+      },
+    }.each do |uri,data|
+      algorithm = OpenTox::Algorithm::Generic.new uri
+      dataset_uri = algorithm.run(data[:params])
+      puts dataset_uri
+      dataset = OpenTox::Dataset.find dataset_uri
+      assert_equal dataset.compounds.size, 3
+      c = data[:feature_value][0]
+      f = data[:feature_value][1]
+      v = dataset.data_entries[c][f].first.to_f
+      assert_equal v.round_to(5), data[:feature_value][2].round_to(5)
+      #dataset.delete
+      #puts dataset.to_yaml
+    end
+  end
+=end
+
+end
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