# # Author: Andreas Maunz, David Vorgrimmler require 'rubygems' require 'opentox-ruby' require 'yaml' if ARGV.size != 2 puts "Args: path/to/dataset.yaml ds_name" puts ARGV.size exit end path = ARGV[0] ds_file = path.split("/").last if File.exists?(path) puts "[#{Time.now.iso8601(4).to_s}] #{ds_file} exists." else puts "#{ds_file} does not exist." exit end subjectid = nil ds_name = ARGV[1] # e.g. MOU ds = YAML::load_file("#{path}") ds_uri = ds[ds_name]["dataset"] algo_params = {} algo_params["dataset_uri"] = ds_uri ds = OpenTox::Dataset.find(ds_uri) ds_nr_de = ds.data_entries.size ds_nr_com = ds.compounds.size [true,false].each do |bb| min_freq = 110 duration = 0.0 while duration < 60.0 && min_freq > 10 do min_freq = min_freq - 10 algo_params["min_frequency"] = min_freq.to_s + "pm" algo_params["backbone"] = bb #algo_params["nr_hits"] = false #algo_params["feature_type"] = true puts "[#{Time.now.iso8601(4).to_s}] #{algo_params.to_yaml}" t = Time.now result_uri = OpenTox::RestClientWrapper.post( File.join(CONFIG[:services]["opentox-algorithm"],"fminer/bbrc/"), algo_params ) duration = Time.now - t ds_result = OpenTox::Dataset.find(result_uri) ds_result_nr_de = ds_result.data_entries.size ds_result_nr_com = ds_result.compounds.size ds_result_nr_f = ds_result.features.size puts puts "[#{Time.now.iso8601(4).to_s}] Bbrc result: #{result_uri}" puts "[#{Time.now.iso8601(4).to_s}] nr dataentries: #{ds_result_nr_de} , (of #{ds_nr_de} ), #{(ds_result_nr_de/(ds_nr_de/100)).to_f.round}%" puts "[#{Time.now.iso8601(4).to_s}] nr compounds: #{ds_result_nr_com} , (of #{ds_nr_com} ), #{(ds_result_nr_com/(ds_nr_com/100)).to_f.round}%" puts "[#{Time.now.iso8601(4).to_s}] nr features: #{ds_result_nr_f}, , #{(ds_result_nr_f/(ds_nr_de/100)).to_f.round}%" puts "[#{Time.now.iso8601(4).to_s}] Duration: #{duration}" puts "------------------------" puts end puts end