require 'test/unit' class ValidationTestUtil @@dataset_uris = {} @@prediction_features = {} def self.upload_dataset(file, subjectid=nil, dataset_service=CONFIG[:services]["opentox-dataset"]) #, file_type="application/x-yaml") raise "File not found: "+file.path.to_s unless File.exist?(file.path) if @@dataset_uris[file.path.to_s]==nil LOGGER.debug "uploading file: "+file.path.to_s if (file.path =~ /yaml$/) data = File.read(file.path) #data_uri = OpenTox::RestClientWrapper.post(dataset_service,{:content_type => file_type},data).to_s.chomp #@@dataset_uris[file.path.to_s] = data_uri #LOGGER.debug "uploaded dataset: "+data_uri d = OpenTox::Dataset.create(CONFIG[:services]["opentox-dataset"], subjectid) d.load_yaml(data) d.save( subjectid ) @@dataset_uris[file.path.to_s] = d.uri elsif (file.path =~ /csv$/) d = OpenTox::Dataset.create_from_csv_file(file.path, subjectid) raise "num features not 1 (="+d.features.keys.size.to_s+"), what to predict??" if d.features.keys.size != 1 @@prediction_features[file.path.to_s] = d.features.keys[0] @@dataset_uris[file.path.to_s] = d.uri elsif (file.path =~ /rdf$/) d = OpenTox::Dataset.create(CONFIG[:services]["opentox-dataset"], subjectid) d.load_rdfxml_file(file, subjectid) d.save(subjectid) @@dataset_uris[file.path.to_s] = d.uri else raise "unknown file type: "+file.path.to_s end LOGGER.debug "uploaded dataset: "+d.uri else LOGGER.debug "file already uploaded: "+@@dataset_uris[file.path.to_s] end return @@dataset_uris[file.path.to_s] end def self.prediction_feature_for_file(file) @@prediction_features[file.path.to_s] end end