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require 'rubygems'
require 'opentox-ruby'
require 'yaml'
@subjectid = nil
def count_features(ds_uri)
puts ds_uri
dataset = OpenTox::Dataset.find(ds_uri, @subjectid)
features = dataset.features.keys
puts "# all features: #{features.size}"
delete_features = []
features.each{ |fn|
dataset.features[fn][RDF.type].each { |typestr|
if typestr.include? "MissingFeature"
delete_features << fn
@missing_features << dataset.features[fn][DC.title]
end
}
}
puts "# Missingfeatures: #{delete_features.size}"
features = features - delete_features
puts "# numeric features: #{features.size}"
puts "-----"
end
@missing_features = []
ds = YAML::load_file("../datasets.yaml")
ds.keys.each { |dataset|
puts "----------"
puts dataset
ds[dataset].keys.each { |pc|
puts pc unless (pc == "dataset") || (pc == "test") || (pc == "training")
count_features(ds[dataset][pc]) unless (pc == "dataset") || (pc == "test") || (pc == "training")
}
puts "----------"
puts
}
puts
puts "Missing features over all datasets:"
puts @missing_features.uniq!.to_yaml
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