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require 'rubygems'
require 'opentox-ruby'
require 'yaml'
@subjectid = nil
if ARGV.size != 1
puts "Args: path/to/dataset.yaml"
puts ARGV.size
exit
end
def count_features(ds_uri)
puts ds_uri
dataset = OpenTox::Dataset.find(ds_uri, @subjectid)
features = dataset.features.keys
puts "# all features: #{features.size}"
feature_names = []
delete_features = []
features.each{ |fn|
feature_names << fn.split("\/feature\/").last
dataset.features[fn][RDF.type].each { |typestr|
if typestr.include? "MissingFeature"
delete_features << fn
@missing_features << dataset.features[fn][DC.title]
end
}
}
@all_feature_names << feature_names.sort
@all_feature_names << ""
puts "# Missingfeatures: #{delete_features.size}"
features = features - delete_features
puts "# numeric features: #{features.size}"
puts "-----"
end
@missing_features = []
@all_feature_names = []
path = ARGV[0]
puts path
ds = YAML::load_file("#{path}")
#ds = YAML::load_file("../datasets.yaml")
ds.keys.each { |dataset|
puts "----------"
puts dataset
@all_feature_names << ""
@all_feature_names << "------ new dataset ------"
@all_feature_names << "-------- #{dataset} --------"
ds[dataset].keys.each { |pc|
if !(pc == "dataset") || (pc == "test") || (pc == "training")
puts pc
@all_feature_names << "--- new feature: #{pc} ---"
count_features(ds[dataset][pc])
end
}
puts "----------"
puts
}
puts
puts "Missing features over all datasets:"
puts @missing_features.uniq!.to_yaml
puts
puts "All feature names:"
puts @all_feature_names
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