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require 'rubygems'
require 'opentox-ruby'
require 'yaml'
@subjectid = nil
def create_f_ds(t_ds_uri, f_ds_uri, del)
regression_training_dataset = OpenTox::Dataset.find(t_ds_uri, @subjectid)
prediction_feature = regression_training_dataset.features.keys.first
regression_feature_dataset = OpenTox::Dataset.find(f_ds_uri, @subjectid)
params = {}
params[:dataset_uri] = regression_training_dataset.uri
params[:prediction_feature_uri] = prediction_feature
params[:feature_dataset_uri] = regression_feature_dataset.uri
params[:del_missing] = del
puts params.to_yaml
feature_selection_algo_uri = File.join(CONFIG[:services]["opentox-algorithm"],"feature_selection/rfe")
puts feature_selection_algo_uri
result = OpenTox::RestClientWrapper.post( feature_selection_algo_uri, params)
puts "--- Feature dataset is: ---"
puts result
puts
end
ds = YAML::load_file("../datasets.yaml")
ds.keys.each { |dataset|
puts "----------------- next dataset -----------------"
ds[dataset].keys.each { |pc|
puts pc unless (pc == "dataset") || (pc == "test") || (pc == "training")
#[false, true].each { |del_missing|
[false].each { |del_missing| #false is default
begin
create_f_ds(ds[dataset]["dataset"], ds[dataset][pc], del_missing) unless (pc == "dataset") || (pc == "test") || (pc == "training")
rescue
end
}
puts "-----------------" unless pc == "dataset"
}
}
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