blob: cfc5e28f88e1b727278b91af64fbe901d94d13bc (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
require 'rubygems'
require 'opentox-ruby'
require 'yaml'
@subjectid = nil
@dataset = []
def create_f_ds(t_ds_uri, f_ds_uri, del)
regression_training_dataset = OpenTox::Dataset.find(t_ds_uri, @subjectid)
prediction_feature = regression_training_dataset.features.keys.first
regression_feature_dataset = OpenTox::Dataset.find(f_ds_uri, @subjectid)
params = {}
params[:dataset_uri] = regression_training_dataset.uri
params[:prediction_feature_uri] = prediction_feature
params[:feature_dataset_uri] = regression_feature_dataset.uri
params[:del_missing] = del
puts params.to_yaml
feature_selection_algo_uri = File.join(CONFIG[:services]["opentox-algorithm"],"feature_selection/rfe")
puts feature_selection_algo_uri
puts "--- Feature dataset is: ---"
result = OpenTox::RestClientWrapper.post( feature_selection_algo_uri, params)
puts result
puts
result
end
ds = YAML::load_file("../datasets_jl1_allnum.yaml")
#ds.keys.each { |dataset|
["LOAEL"].each { |dataset|
puts "----------------- next dataset -----------------"
@dataset << "\"#{dataset}\": {"
ds[dataset].keys.each { |pc|
if !((pc == "dataset") || (pc == "test") || (pc == "training") || (pc == "hybrid"))
puts pc
#[false, true].each { |del_missing|
[false].each { |del_missing| #false is default
begin
result = create_f_ds(ds[dataset]["dataset"], ds[dataset][pc], del_missing)
@dataset << " \"#{pc}\": \"#{result}\","
rescue
end
}
else
@dataset << " \"#{pc}\": \"#{ds[dataset][pc]}\","
end
puts "-----------------" unless pc == "dataset"
}
@dataset << "},"
}
puts @dataset
|
